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Align your sequence(s)

picornavirus coat proteins

class : all beta number of structures : 6 average size : 780 average PID : 33 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1tme rasmol 1 1 39 4 Coat proteins VP1, VP2, VP3 and VP4 murine encephalomyelitis virus 2.80 30.00
2mev rasmol 1 1 70 4 Coat proteins VP1, VP2, VP3 and VP4 mengo virus 3.00 22.10
1bbt rasmol 1 1 85 4 Coat proteins VP1, VP2, VP3 and VP4 foot and mouth disease virus 2.60 19.20
1r1a rasmol 5 1 44 4 Coat proteins VP1, VP2, VP3 and VP4 rhinovirus serotype 1 3.20 29.30
4rhv rasmol 17 1 68 4 Coat proteins VP1, VP2, VP3 and VP4 rhinovirus serotype 14 3.00 16.00
2plv rasmol 6 1 69 4 Coat proteins VP1, VP2, VP3 and VP4 polio virus 2.90 20.00
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Pico_P1A  rhv  
other info key to JOY annotation | show related PDB structures

                          10        20        30        40        50  
1tme  (   1 )                                 gsdnAEkGkvsnddasvdfva
2mev  (   1 )                                 gvenaekGvtentdatadfva
1bbt  (   1 )                                 ttsagesadpvtttven-ygg
1r1a  (   5 )    nyide-vlnevlvVpnikeshhttsnsaplldaaEtGhtsnVqPedAieT
4rhv  (  17 )                 tvasissgpkhtqkvpilTAnETGATmpVlpSdsiet
2plv  (   6 )    gssst aatSrdalpnteasgpthskeipalTAVETGATNpLvpsdtvqt
                                                  333              

                          60        70        80        90        100 
1tme  (  22 )    ep--vklpenqTrVaffYDrAvpIgmLrpGqn-iestFvyqendlrLNCL
2mev  (  22 )    qp--vylpenqtkvaffyDrsspIgaFAVksgslesgFapfSnkacPNSV
1bbt  (  21 )    et--qiqrrqhtdvsfiMDrfvkVtp--------------------qnqi
1r1a  (  54 )    ryviTsqtrdeMsIesFLGrSgcVhisrIkV-dytdyngq-diN--Ftkw
4rhv  (  54 )    rttymhfnGseTDVecFLGrAacVhvteIqnkdatgidnhreakL-Fndw
2plv  (  64 )    rhvvqhrsrseSSIesFFargacVtiMtVdNPastt-----nkdKlfavw
                              aaaaa   bbbbbb                     bb

                          110       120       130       140       150 
1tme  (  69 )    lLTPLPSFCpdstsgpvktkaPvqWrWVrsG-----gttnfplmTkqDya
2mev  (  70 )    iLTPgPQFdpa-----ydqlrPqrlteIwGngne-etsevfplkTkQDys
1bbt  (  49 )    NiLdLm------------------------------------qVpshtlV
1r1a  ( 100 )    kITLQ----------------------------------------emAqi
4rhv  ( 103 )    kInls----------------------------------------slVqL
2plv  ( 109 )    kityk----------------------------------------dtvqL
                 b                                               aa

                          160       170       180       190       200 
1tme  ( 114 )    FLcFsPFTYYkCDLeVTVsAlgt---------dtVasVLRWApTgapadv
2mev  ( 114 )    FClfSpFVYYkCDLeVtLsPhts---------gaHGLLVRwCPTgTptkp
1bbt  (  63 )    GglLraSTYYfSDLeIaVk---------------HegdLtwVPNgApe-k
1r1a  ( 110 )    RRkFeLFTYVrFdSEITLvPcI--agrgddig-hIvMQYMyVp-pgapiP
4rhv  ( 113 )    RKkleLFTYVRFdSEYTIlAtasqpdsanyss-nLvVQAMyVp-pgapnP
2plv  ( 119 )    RRkLeFFTYSrfdmElTFvVtanftetnnghalnqvYQIMyVp-pgapvP
                 aaa   bbbbbbbbbbbbbb                bbbbbb        

                          210       220       230       240       250 
1tme  ( 155 )    tdqligytPSLgetrnphmwlvgagn-tqisFVVpYnSplSVLPAaWFNG
2mev  ( 155 )    ttqvlhevSSLsegrTpqvySagpgtsnqIsfvVpyNSpLsvLPAVwYNG
1bbt  (  97 )    ALdn---------ttNpTAyhk----apltrlaLpyTAPhrvLAT-vyNg
1r1a  ( 156 )    skRndf---sWqsgtnmSifwqh--gqpfprFSIPFlsiaSAYYM-fyDG
4rhv  ( 161 )    kewddy---TWqsasnpSvffkv---gdtsrfSVpYvGlaSAYNc-fyDG
2plv  ( 168 )    ekwddy---tWqtssnpSifyty--gtapariSvPYvgisnAysH-fyDg
                                  bbbb        bbbbb        bb      

                          260       270       280       290       300 
1tme  ( 204 )    Wsdfg--------ntkdFGvApnAdFGrLWIQGnt---------sAsVrI
2mev  ( 205 )    Hkrfd--------ntgdLGiApnSdFGtLFFAGtk------pdikFtVyL
1bbt  ( 133 )    ec               atlptsFnYGaIkAt-----------rVteLlY
1r1a  ( 200 )    Ydgdn--------tsskYGSvvtNdmGtICSrIvtekqklsVvItThIyH
4rhv  ( 204 )    Yshdd--------aetqYGitvlnhMgsMAFrIvnehdehkTlVkIrVyH
2plv  ( 212 )    FskvPlkdqsaalGdslYgaaslndfGiLAVrVvndhnpTkvtSkIrVyl
                                            bbbbb             bbbbb

                          310       320       330       340       350 
1tme  ( 237 )    RYKkMkVFCpRPTLFf-------------------pwpv           
2mev  ( 241 )    rYknMrvfCpRPtvff-------------------pwptsgdkidmt  e
1bbt  ( 179 )    rMkrAetycprPllaihptearhkqkivap                    
1r1a  ( 242 )    KAKhTkAWCpRPPRAVpYthshvtNYmpetgdvttaIvrrntittA    
4rhv  ( 246 )    RAKhVeAWIPrAPRALpYtSigrtNy---pkntepvIkkrkgdiksy   
2plv  ( 262 )    KPKhIrVWCPRPPRaVaYygpgvDYkd----gtltpLstkdltty  eac
                 bbbbbbbbbb                                        

                          360       370       380       390       400 
1tme  (  12 )       drvasdkagnsatntqstvgrlcGygeaHhgeh--PascadtAtdkv
2mev  (   9 )    nlsdrvsqdtAgntvtntqstvgrlvGygtvHdgeh--PaSCadtAseki
1bbt  (   9 )    lledrilttrnghttsttqssvgvtygyataedfvs--GpNTsgletr-v
1r1a  (  11 )       drimqitrGdstissddVanavvGygvwPhyLtpqdatainkptqpd
4rhv  (   8 )    gysdrvqqitlGnstitTqeAANAVVCYaewPeylpdvdasdvnktskpd
2plv  (   8 )    gysdrvlqltlgnstittqeAANsVvAYgrwPeyLrdseanpvdqptepd
                       bbbb    bbbb      bb333                     

                          410       420       430       440       450 
1tme  (  57 )    laAerYYtidLasWtttqeAFShIRIPLPHvLAgedGgvFGatLrrhylC
2mev  (  57 )    laVerYytfkVndWtstqkpfeYIrIPLPhvLsgedGgvFGatLrrhYLV
1bbt  (  56 )    vqAerFfkthLfdWvtsdsfGrchlleLPtdh--k--gvYgsltdsyAYM
1r1a  (  58 )    tsSnrFytLeskhWngsS---kGWWWKLPDALkd--mgiFGenMyyhflG
4rhv  (  58 )    tsVcrFytLdsktWttgs---kGWCWKLPDALkd--mgvFGqnMffhslG
2plv  (  58 )    vaAcrFytLdtvsWtkes---rGwWWKLPdALrd--mglFGqnMyyHylG
                 33    bb   bbb         bbbbb          aaaaaa  bbbb

                          460       470       480       490       500 
1tme  ( 107 )    KtGWrVQVqCnAsqfHAGSLLVFMAPEFYTGkgt--ktgdmEPtdpftmD
2mev  ( 107 )    kTGWrVQVqCnAsqfHagsLLVFMAPEYpTl-------------dvFamd
1bbt  ( 102 )    RNGWdVeVtAvGnqfNggcLLVAMVPELcsiq------------------
1r1a  ( 103 )    rSGYTVHVqCnaskfHQGTLLVAMIPEHQLASakhg-svtAgYklTHpge
4rhv  ( 103 )    rSGYTVHVqCnAtkfhsGCLLVVVIPEHQLASheGg-nvsVkYtfThpge
2plv  ( 103 )    rSGYTVHVqCnaskfhQGALGVFAVPEMCLAgdsntttmhTsYqnAnpGe
                 bbbbbbbbb       bbbbbbbbbb                        

                          510       520       530       540       550 
1tme  ( 155 )    ttwrapqgaPtGyrYDsrt-------gFFAMNHqNQWQWTVYphQILNLR
2mev  ( 144 )    nrWskd-nLpnGtrtqtNrk------GpFAmdHQNfwqWtlYphQfLnLr
1bbt  ( 134 )    --------------------------------kreLyqLtlFphQfInpr
1r1a  ( 152 )    aGRDvsqerdas------lrqPSddswL-NFdGtLLGNLLIFpHQFINLR
4rhv  ( 152 )    rGidLssanevg--GPvKdV-------LyNMnGtLLGNLLIFPhQFINLR
2plv  ( 153 )    kGgtFtgtFtpdnnqtspar-rFcPVDyLLGNGtLLGNAFVFPhQIINLR
                                                    333333  bbbbb  

                          560       570       580       590       600 
1tme  ( 198 )    tNtTVdLEVPYVNiapTssWtqHANWTLVVAVFSpLqyasgsssdVqItA
2mev  ( 187 )    tNtTVDLEVpyvNiApTssWtqHAsWTLVIAVvapLtystgastsLdItA
1bbt  ( 152 )    tNmtAhItVpFvgVnrYdqYkvHkPWTLVVMVvapLtvnteGapqIkVyA
1r1a  ( 195 )    sNnSATLIVPYVNAvpMdsMlrHNNWCLVIIPISplrsettssnivpItV
4rhv  ( 193 )    TNnTATIVIPyINSvpidsmtrHNnVSLMVIPIApLtvptgatpslpItV
2plv  ( 202 )    TNnCATLVLPYVNslsIdsMvkHnNWGIAILPLApLnfasessPeipItL
                    bbbbbb                bbbbbbbbbbbb        bbbbb

                          610       620       630       640       650 
1tme  ( 248 )    SIqPvnPVFNglrhetvia  spiavtvrehkgcfystnpdttvPiygkt
2mev  ( 237 )    SIqPVrPVFNGlRhevlsrq spipvtirehagTwystlpdstvpiygkt
1bbt  ( 202 )    nIAPtnVhVAGeFPske    gifpvacsdGygglvttdpktadpvygkv
1r1a  ( 245 )    SISPmcAEFSgaraknikq   glpvyitpgsgqfmttddmqSpCalpwy
4rhv  ( 243 )    TIAPmcTEFSgirsksivpq  glptttlpgsgqflttddrqSpSalpny
2plv  ( 252 )    TIAPmcCEFNglrnitlprlq glpvmntpgsnqyltadnfqSpCalpef
                 bbbbbbbbbbbb                                      

                          660       670       680       690       700 
1tme  (  30 )    iStpndyMcgefsdLleLCk-lpTFLGnpns----nnkryPyfsAtnsvp
2mev  (  30 )    pvapanymvgeykdflEiAq-iptfIgnkvp------navpyIeAsntav
1bbt  (  30 )    fnpprnqlpgrftnlldvAeacptfLrFeg--------gvpyvtTktdsd
1r1a  (  29 )    hptkeIsIpgeVknLieMCq-vdTLIPVnNvgnnVgnvsMYtVqLgnqtg
4rhv  (  29 )    eptprihIPGkVhNLlEIIq-VDTLIPMnn-thtkDevnSYLIpLnanrq
2plv  (  29 )    dvtppidIPGeVkNMMELAe-IdTMIPFdLsatkkNtMeMYrVrLsdkph
                               aaaa     bb                bbbb     

                          710       720       730       740       750 
1tme  (  75 )    -ttslvdYqVaLs-cscMcNSMLAAVArnFnqYrGSLNFLFVFTGAamVk
2mev  (  73 )    ktqplavYqVtLs-çsçLanTfLAaLSrnfAQYrgsLvYtFvftgtamMk
1bbt  (  72 )    --rvLaqfdMsLa-akhMsnTfLaglAqyyTQYsgtInLhFmftGptdAk
1r1a  (  78 )    maqkVFSIkVdIt-stPLATTLIGEIASYYthWTGSLRFSFMFCGTanTt
4rhv  (  77 )    -neqVFGTnLfIGd-gVFktTLLGEIVQYYthWSGSLRFSLMYTGPalSs
2plv  (  78 )    tddpiLCLsLsPAsDpRLshTMLGEILNYYthWAGSLKFTFLFCGSmmAt
                      bbbb            aaaaaa  bbbbb  bbbbbbb       

                          760       770       780       790       800 
1tme  ( 123 )    gkFLIAYtppgagkPttrdqAmqatyaiWdLglnSSfVFTApFiSpthyr
2mev  ( 122 )    gkFLIAYTPPGAgkPtsrdqAmqAtyaiWdLglnssysFtVpFISpthfr
1bbt  ( 119 )    ArYMVAYAPpgmepPktPeAAahCihaewdtglnskftfsIpYLsaadyt
1r1a  ( 127 )    LkLLLAYtppgidePttrkdAmlgthvvWdVglqSTISLVVpwvsashfR
4rhv  ( 125 )    AkLILAYtppgarGPqdrreAmlgthvvWdIglqSTIVMTIpwtsgvqfR
2plv  ( 128 )    gkLLVSYappgadpPkkrkeAmlgthviWdIglqSSCTMVVpwiSnttyR
                  bbbbbbb         aaaa   bbbbbb     bbbbbb        b

                          810       820       830       840       850 
1tme  ( 173 )    qTsytsa  asvdGwVTVWQltpLtypsgTpvnSdILTLVSAGdDFTLrm
2mev  ( 172 )    mVgtdqanitNVdGWVTVWQltpLtyppgCptsAkIlTmVSAgkdFsLkm
1bbt  ( 169 )    yTasdvaettnvqGwVCLFQit-hgk----AdgdaLvVlASAGkdFeLrl
1r1a  ( 177 )    lTadnk---ysmAGyITCWyqtnLvvppsTpqtAdMLCFVSACkDFCLrm
4rhv  ( 175 )    yTdpdt---yTsAGfLSCWYqtsLilppeTtgqVyLLSFISACpdFkLrl
2plv  ( 178 )    qTidds---fteGGyISVFYqtrIvVplsTpreMdILGFVSACndFSVrl
                 b             bbbbbb             bbbbbbbbb    bbbb

                          860       870       880       890       900 
1tme  ( 223 )    pisptkwvPq                     sgnegviinnfysnqyqnS
2mev  ( 222 )    pIspapwspq                    segnegviinnfysnqyqns
1bbt  ( 214 )    pVdarae                        sGntgsiinnyymqqyqns
1r1a  ( 224 )    ardTdlHiqsgpIeq                     yfninyfkdaaSsg
4rhv  ( 222 )    MkdTqtisqtvalte                        inyykdaASts
2plv  ( 225 )    LrdTthIeqka    gaqvssqkvgahensn stinyttinyyrdsASna
                 b                                                 

                          910       920       930      
1tme  (  34 )    idlsas                                
2mev  (  33 )    idlsanatgsdppktygqfsnllsgavnafsnmlplla
1bbt  (  34 )    mdtqlg           ndwfsklassafsglfgalla
1r1a  (  40 )    asrld                                 
4rhv  (  40 )    sagqslsmdpskFtePVkdlmlkGapaLn         
2plv  (  41 )    AskqdfsqdpskFtePIkdvliktapmLn         
                                                       


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