Prokaryotic molybdopterin oxidoreductases
|
class : multi domain |
number of structures : 4 |
average size : 759 |
average PID : 39
% |
PDB
code |
start
residue |
start
chain |
end
residue |
end
chain |
name |
source |
resolution |
R-factor |
1cxs
 |
1 |
A |
780 |
A |
dimethyl sulfoxide reductase (DMSO reductase) |
Rhodobacter sphaeroides |
2.2 |
17.2 |
1dmr
 |
3 |
- |
781 |
- |
dimethyl sulfoxide reductase (DMSO reductase) |
Rhodobacter capsulatus |
1.82 |
14.7 |
1tmo
 |
5 |
- |
798 |
- |
trimethylamine n-oxide reductase |
Shewanella massilia |
2.5 |
18.2 |
1aa6
 |
1 |
- |
715 |
- |
formate dehydrogenase H |
Escherichia coli |
2.3 |
21.7 |
|
pir |
ali |
malform |
joy-html |
colour postscript |
postscript |
superimposed coordinates
(RasMol)
|
10 20 30 40 50
1cxsa ( 1 ) eglangevmSGCHW----GVFkArVengrAvaFepwd---kDpapShQLp
1dmr ( 3 ) langtvmSGSHW----GVFtAtVengrAtaFtpwe---kDphpSpMla
1tmo ( 5 ) nedewlTTGsHF----GAFkMkrkngvIaeVkpFd---lDkyptdMin
1aa6 ( 1 ) mkkvvTVcPYcASGcKInLVVdngkIvrAeaAqGkTNqgtLclKGy
bbbbbbb bbbbbbbb bbbbbb aa
60 70 80 90 100
1cxsa ( 44 ) GVldsIySp----TRIkyPMVRreFlekgvnAdrstRGngdFvrvtwdeA
1dmr ( 44 ) GVldsIySp----TRIkyPMVRreFlekgvnAdrstRGngdFvrvsWdqA
1tmo ( 46 ) GIrgmVyNp----SRVryPMVRldFllkghkSnthqRGdFrFVrvtwdkA
1aa6 ( 47 ) yGwdFIndtqiLTPRLktPMIrrqr-------------gGkLepvswdeA
aaaaaa bbbaaaaaa333 333 bbb aaaa
110 120 130 140 150
1cxsa ( 90 ) LdlVareLkrVqesygptGTFGGSygWksPGrLHncQvLMrrALnlaggf
1dmr ( 90 ) LdlVAaeVkrVEetygpeGVFGGSygWksPGrLHncTtLLrrMLtlAggy
1tmo ( 92 ) LtlFkhSLdeVQtqygPsGLHAGQtgwraTGqLHssTsHMQRAVgMHGny
1aa6 ( 84 ) LnyVAerLsaikekygpdAIQT-TGSSrgtGNE--TNYVMQkFARAVIgT
aaaaaaaaaaaaaaa 333bb aaaaaaaaaaa
160 170 180 190 200
1cxsa ( 140 ) VnssgD-ysTaAAqiIMphVMGtlEVyeqQTAWpvVvenTdLMVFWaadP
1dmr ( 140 ) VnGagd-ySTgAAqvIMphVVGtlEVyeqQTAWpvLaenTeVMVFWaAdP
1tmo ( 142 ) Vkkigd-ysTgAGqtILpyVLGsteVyaqgtSWplILehSdtIVLWsNdp
1aa6 ( 131 ) NNVDCcarvHgpSvagLhqSVGnG---AMSNaIneIdn-TdLVFVFgYnP
bbb aaaaaaaa aaaaaaa bbbbb a
210 220 230 240 250
1cxsa ( 189 ) mktNeiGwvIPDHgAyagMkaLkek----gtrVICInpvrteTAdyFgAd
1dmr ( 189 ) iktSQiGwvIPeHgAYpgLeaLkak----gtkVIVIdpvrtkTvefFgAe
1tmo ( 191 ) yknLqvGwnAETHeSfayLaqLkekvkqgkIrVISIdpVvtkTqayLgce
1aa6 ( 178 ) adsH--------pIVanhVinAkrn----gAkIIVCdpRkIetAriAd-m
aaa aaaaaaaaaaa bbbbb aaaaaa b
260 270 280 290 300
1cxsa ( 235 ) vVsPrPQTdvALMLGMAhTLysedlHdkdFLenCTtgfdlFaayLtGesd
1dmr ( 235 ) hitPkPQTdvAIMLGMAhTLvaedlydkdFianyTsgfdkFlpyLdGetd
1tmo ( 241 ) qlyVnPQTdvTLMLAIAhEMiskklyddkFIqgySlgfeeFvpyVmGtkd
1aa6 ( 215 ) hIaLknGSnIALLNAMGhVIieenlydkafvasrTegfeeYrkiVe----
bb aaaaaaaaaaaaaa aaaaaaabb aaaaaaaa
310 320 330 340 350
1cxsa ( 285 ) gtpKtAewAaeiCglpaeqIrelArsFvag-rTMLAAGWsIQrmhhGEQA
1dmr ( 285 ) stpKtAewAegiSgVpaetIkeLArlFesk-rTMLAAGWsMQrmhhGEQA
1tmo ( 291 ) gvaKtPewAapiCgVeahvIrdlAkTLvkg-rTQFMMGwciQrqqhGEQP
1aa6 ( 261 ) --gytPesVediTgVsaseIrqAArmYAqAksAAILWgmgVTqfyqGveT
aaaaaaaa aaaaaaaaaaaaa bbbbb 333 aaa
360 370 380 390 400
1cxsa ( 334 ) HWMLVTLASMIGqIGlpGGgFGLSYhySNGGsptSdGp----aLggIsdg
1dmr ( 334 ) HWMLVTLASMLGqIGlpGGgFGLSYhySGGGtpsTsGP----aLagItdg
1tmo ( 340 ) YWMaAVLATMIGqIGlpGGgIsYgHhySSIGVpsSgAa----aPgaFprn
1aa6 ( 309 ) VrSLTSLAMLTGNLGkphAGVNPVRgqNNVqGAcDMGAlPdTYPGyqyVk
aaaaaaaaaaa bbb
410 420 430 440 450
1cxsa ( 380 ) ---------------gwa--tsIpCARVVdMLlnpggefqfngatatYpd
1dmr ( 380 ) g-aatkgpewl--aasGa--svIpvARVVdMLenpgaefdfngtrskFPd
1tmo ( 386 ) ldenqkplfdssdfkgas--stIpvARWIdAIlepgktidangskvvYPd
1aa6 ( 359 ) dpanrekFakaWgvesLpahtgyrIseLphrAah--------------ge
bbb333aaaaaa bbb bbb
460 470 480 490 500
1cxsa ( 425 ) VkLAYWAggnPFAhHQdRnrMlkAWekLeTFIVQdfqWtATArhADIVLP
1dmr ( 425 ) VkMAYWVggnPFVhHQdRnrMvkaWekLeTFVVHdfqWtPTArHADIVLP
1tmo ( 434 ) IkMMIFSgnnPWnhHQdRnrMKqAFhkLeCVVTVdvnWtaTCRFSDIVLP
1aa6 ( 395 ) VrAAYIMgeDPLQtdaelsaVrkAFedLeLVIVQdiFMTkTASaAdVILP
bbbbb aaaa aaaaaaa bbbbbb aaaa bbbb
510 520 530 540 550
1cxsa ( 475 ) ATTSYErnDIEsVGdySnrAILAMkkVVdplyeArsdydIFaaLAerLgk
1dmr ( 475 ) ATTSYErnDIEtIGdySntGILAMkkIveplyeArsdydIFaaVAerLgk
1tmo ( 484 ) ACttyErnDIDvYgayAnrGILAMqkMveplfdSlsDfeIFtrFAavLgk
1aa6 ( 445 ) STSWGEheGVFTA-ADR--GFQRFfkAvepkwdLktDWqIISeIAtrMgy
333 bbbbb bbbbb aaaaaaaaaaa
560 570 580 590 600
1cxsa ( 525 ) gaeFtegrdemgWIssFYeaAvkqAefknvaMpsfedFwsegiveFpit-
1dmr ( 525 ) GaeFtegkdemgwIksfYddAakqGkaagvqMpaFdaFwaeGiveFpvt-
1tmo ( 534 ) ekeYtrnmgemeWLetLYneCkaanag-kfeMpdfatFwkqGyvhFgdg-
1aa6 ( 492 ) --pMhyn-nTqeIWdeLrhlCpdFy------GAtyekMgelgFIQWpCrd
aaaaa aaaaaaaaaaaaaaaa aaaaaaa bbb
610 620 630 640 650
1cxsa ( 574 ) ----eganfvryadFredplfnplgTpsglIEIySknIekmgyddCpahP
1dmr ( 574 ) ----dgadfvryasFredpllnplgTptglIEIySknIekmgyddCpahP
1tmo ( 582 ) ----e--vwtrhadFrndpeinplgTpsglIeIfSrkIdqfgyddCkGhP
1aa6 ( 533 ) tsdadqGtsylFke--------kFdTpnglAqFfTc--------------
aaaaa bb aaaa
660 670 680 690 700
1cxsa ( 620 ) twmePaeRl-ggaga-kypLHVvAshPksRlhs--qLNGT-slrdlyava
1dmr ( 620 ) twmePleRL-dgpga-kypLHIaAshPfnRLhs--qLNGT-vlregyavq
1tmo ( 626 ) twmeKteRShgGpgsdkhpIwLQschPdkRLhs--qMCESreyretyavn
1aa6 ( 561 ) dwvapidklt-----deypMvlstvrevgHyscRSmTgNCaaLaalade-
bbbb
710 720 730 740 750
1cxsa ( 665 ) gHEpClInpadAaargIadgdvLrVfNdrgqILVGAkvsdaVmpgAIqIy
1dmr ( 665 ) ghEpClMhpddAaargIadgdvVrVhNdrgqILTGVkvtdaVmkgVIqIy
1tmo ( 674 ) grEPVyISpvdAkargIkdgdiVrVfNdrgqLLAGAvvsdnFpkgIVrIh
1aa6 ( 605 ) -pGyAqInteDAkrlgIedeaLVwVhsrkgkiITrAqvsdrPnkgAIYmt
bbbb aaaaaa bbbbb bbbbbbbb bbb
760 770 780 790 800
1cxsa ( 715 ) eGGWYDpl-------dpseegTlDkYGDVNVLSlDvGTSkLAqGNCgQTI
1dmr ( 715 ) eGGWYdps-------dvtepgTlDkYGDVNVLSaDigTSkLAqgNCgQTV
1tmo ( 724 ) eGAwYGPVGkdgstegGaevgalCSYGDPnTLTlDigTSkLAqacSaYTC
1aa6 ( 654 ) yQwWp----------------------------------------eykyc
333
810 820 830
1cxsa ( 758 ) LAdVekya--------gapVtvtVFdtp---kgA
1dmr ( 758 ) LAeVekyt--------gpavtltgfvAp---kaAe
1tmo ( 774 ) LVeFekyq--------gkvpkvsSfdgpievei
1aa6 ( 682 ) AVrVepiadqraaeqyvideynklktrL--reaala
bbbbbb