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Align your sequence(s)

ferredoxin (4Fe-4S)

class : small number of structures : 14 average size : 72 average PID : 33 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1h98 rasmol 1 A 77 A ferredoxin Thermus aquaticus 1.64 15.90
1bwe rasmol 1 A 77 A ferredoxin Bacillus schlegelii N/A N/A
1clf rasmol 1 - 55 - ferredoxin Clostridium pasteurianum N/A N/A
2fdn rasmol 1 - 55 - ferredoxin Clostridium acidi-urici 0.94 10.00
1dur rasmol 1 A 55 A 2[4Fe-4S] ferredoxin Peptostreptococcus asaccharolyticus 2.00 15.50
7fd1 rasmol 1 A 106 A 7-Fe ferredoxin I Azotobacter vinelandii 1.30 15.80
1blu rasmol 1 - 80 - ferredoxin Chromatium vinosum 2.10 19.20
1xer rasmol 1 - 103 - ferredoxin Sulfolobus sp. 2.00 17.30
1hfe rasmol 2 L 86 L Fe-only hydrogenase (larger subunit) Desulfovibrio desulfuricans 1.60 15.80
1dwl rasmol 1 A 59 A ferredoxin I Desulfomicrobium norvegicum N/A N/A
1vjw rasmol 1 - 58 - ferredoxin(A) Thermotoga maritima 1.75 15.90
1fxd rasmol 1 - 58 - ferredoxin II Desulfovibrio gigas 1.70 15.70
1fxr rasmol 1 A 64 A ferredoxin I Desulfovibrio africanus 2.30 18.20
1k0t rasmol 1 A 80 A PsaC subunit of photosystem I Synechococcus sp. pcc 7002 N/A N/A
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : fer4  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1h98a  (   1 )                                                      
1bwea  (   1 )                                                      
1clf   (   1 )                                                      
2fdn   (   1 )                                                      
1dura  (   1 )                                                      
7fd1a  (   1 )                                                      
1blu   (   1 )                                                      
1xer   (   1 )                          gIdpnYrtnrqvvgehsgHkvYGpvepp
1hfel  (   2 )    srtvmerieyemhtpdpkadpdk---------------------------
1dwla  (   1 )                                                      
1vjw   (   1 )                                                      
1fxd   (   1 )                                                      
1fxra  (   1 )                                                      
1k0ta  (   1 )                                                      
                                                                    

                           60        70        80        90        100 
1h98a  (   1 )           phVIC-epCigvkdqsCvevCpveCIydgg-------dQfyIh
1bwea  (   1 )           ayVIT-epCigtkcasCvevCpvdCIhege-------dQyyID
1clf   (   1 )           aykIa-dsCv--scgaCaseCpvnAIsqgd-------sifvId
2fdn   (   1 )           ayvIn-eaCi--scgaCepeCpvnAIssgd-------dryvId
1dura  (   1 )           ayvIn-dsCi--acgaCkpeCpvnCIqegs--------iyaId
7fd1a  (   1 )           AfVVT-dnCIkCKyTdCVevCpvdCFyeGp-------NFLVIh
1blu   (   1 )           ALmIt-deCi--ncdvCepeCpNgAIsqgd-------etYvIe
1xer   (  30 )    vlGIhGtiVGVDFdlCi--adgsCinaCpvnVFqwydtpgHpasekKADP
1hfel  (  25 )    -----lhfVqIdeakci--GcdtcsqycptaAIfge------mgepHsIp
1dwla  (   1 )           tIvidheeCi--gcesCVelCp-evFamid-----geekAmvt
1vjw   (   1 )          mkVrVdadaCi--GcgvCenlÇp-dVFqlgd-----dg-kAkvl
1fxd   (   1 )           pIeVn-ddCm--aCeaCveiÇp-dVFemne-----egdkAvvi
1fxra  (   1 )         arkFyVdqdeCi--acesCveiAp-gAFamdp-----eiekAyvk
1k0ta  (   1 )          shSvkiydtci--gctqCvraCpldVLemvpwdgckagqIaSSp
                          bbb                     bbb           bbb 

                           110       120       130       140       150 
1h98a  (  36 )    --peeCidc------gaCvpaCpvnAIypeedVpeqwksyiekNrklAgl
1bwea  (  36 )    --PdvCidc------gaCeavCpvsAIyhedfVpeewksyiqkNrdffkk
1clf   (  34 )    --adtCidc------gnCanvCpvgAPvq---e                 
2fdn   (  34 )    --adtCidc------gaCagvCpvdAPvq---a                 
1dura  (  33 )    --adsCidc------gsCasvCpvgAPnp---ed                
7fd1a  (  36 )    --pdeCidc------alCepeCpAqAIfsedeVpedmqeFiqlNaelAev
1blu   (  34 )    --pslCTeCvGhyetsqCvevCpvdCIikdpsheetedeLraKyeritg 
1xer   (  78 )    vneqaCifc------maCvnvCpvaAIdVkpp                  
1hfel  (  62 )    -hieacinc------gqclthcpenAIyeaqs                  
1dwla  (  36 )    -apdsta-----ecAqdAidaCpveaIsKe                    
1vjw   (  36 )    -qpe-Tdlp----çAkdAadsCptgAIsV                     
1fxd   (  35 )    -npd-Sdld----çVeeAidsCpaeAIvr---s                 
1fxra  (  38 )    -dvegasqe----eVeeAmdtCpvqCIhw---ede               
1k0ta  (  43 )    -rtedcvgck------rCetACptdfLsirvylgaettrsmglay     
                                            bbb                     

                           160       170       
1h98a                                          
1bwea                                          
1clf                                           
2fdn                                           
1dura                                          
7fd1a  (  78 )    WpnitekkdplpdAedwdgvkgKlqhler
1blu                                           
1xer                                           
1hfel                                          
1dwla                                          
1vjw                                           
1fxd                                           
1fxra                                          
1k0ta                                          
                                               


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