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Align your sequence(s)

Glycosyl hydrolases family 18, TIM barrel domain

class : alpha beta barrel number of structures : 4 average size : 336 average PID : 28 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1edq rasmol 133 A 563 A chitinase A Serratia marcescens 1.55 18.7
1e15 rasmol 3 A 446 A chitinase Serratia marcescens 1.9 18.3
1d2k rasmol 36 A 427 A chitinase 1 Coccidioides immitis 2.2 17
1e9l rasmol 22 A 393 A macrophage secretory protein Mus musculus 2.5 19.8
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Glyco_hydro_18  
CAZy : GH_18  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1edqa  ( 133 )    tdGshlapLkeplleknkpykqnsgkvVGSYFVEwGVy----------gr
1e15a  (   3 )                           trkAVIGYYfIptnqInnYtetdtsvV
1d2ka  (  36 )                           ggfrSVVYFVNwAIy----------gr
1e9la  (  22 )                             yqLMÇYYTswAkdrp-------ieg
                                            bbbbbbb333              

                           60        70        80        90        100 
1edqa  ( 173 )    nftVdkIP---AqNLtHLLYGfIPIÇGgngiNdsLkeiegsfqaLqrsÇq
1e15a  (  30 )    pfPVsnItpakAkqLtHINFSfLdIns-----------------------
1d2ka  (  53 )    ghnPqdLk---adqFTHILYAfAnIrp-----------------------
1e9la  (  40 )    SFkPgnId---pcLÇthLIYAfAgMq------------------------
                     333          bbbbbbbbb                         

                           110       120       130       140       150 
1edqa  ( 220 )    gredFkVsihdpfAAlqkaqkgVtawddp--ykGNFGQLMaLkqAhpdLk
1e15a  (  57 )    ---nleCawdp--------------aTndakArdVVnrLtalkahnpsLr
1d2ka  (  77 )    ---sGeVylsdtwADtdkhYpgDkwdepgnNVyGCIKqMYllKknnrnLK
1e9la  (  63 )    ---nneItytheqDl------------------rdYeaLNglkdkNteLk
                        bb     aa                  aaaaaaa         b

                           160       170       180       190       200 
1edqa  ( 268 )    ILPSIGGwtL-------SDPFFf-MgdkvkRdrFvgSVkefLqtwkFFDG
1e15a  (  90 )    IMFSIGGwyySndlgvshanYvnAVktpasrakFAqSCvriMkdy-gFDG
1d2ka  ( 124 )    TLLSIGGwty-------SpnFktPAsteegrkkFAdtSlklMkdL-GFDG
1e9la  (  92 )    TLLAIGGwkf------gpapFsaMVstpqnrqiFIqsVirfLrqy-nFdG
                  bbbbbb               aaa   aaaaaaaaaaaaaaaaa     b

                           210       220       230       240       250 
1edqa  ( 310 )    VDIDWefpgGkGanpnlGspqDgeTYvlLMkeLramLdqLsvetg---rk
1e15a  ( 139 )    VDIDWeyPq----------aaeVdgFiaALqeIrtlLnqqtitdgrqalp
1d2ka  ( 166 )    IDIDWEyPed---------ekqAndFvlLLkACreaLdaysakhp-ngkk
1e9la  ( 135 )    LNLDWQyPGsr-----gSppkDkhlFSvLVkeMrkaFeeEsvekd--ipr
                  bbbb                 aaaaaaaaaaaaaaaaaaaaaa       

                           260       270       280       290       300 
1edqa  ( 357 )    YeLTSAIsAGkdkIdk-V-aYnvAqnsMdhIFLmSydFygafdlknlghq
1e15a  ( 179 )    YqLTIAGAGgAffLsrYYskLaqIVapLdyINLmTydlagpwek-vtnhq
1d2ka  ( 206 )    FLLTIASPAgpqnYnk-L-kLaeMdkyLdFWNLmAydFSgswdk-vsghm
1e9la  ( 178 )    LlLTSTGAGiidvIksGY-kIpeLSqsLdyIQVMTYdLhdpkdg-ytgen
                   bbbbbbb  aaaa      aaaaa    bbbbb                

                           310       320       330       340       350 
1edqa  ( 405 )    talnapa----------------------wk--pdTayTTvnGVnALlaq
1e15a  ( 228 )    AalfGdaagptfyNaLreAnLgwsweeltrAFpSpfslTVDAAVqQHlMm
1d2ka  ( 253 )    Snvfpst----------------------t-kpesTpfSSdkAVkdYika
1e9la  ( 226 )    Splyksp----------------------ydigksadlNVdsIIsyWkdh
                                                         aaaaaaaaaa 

                           360       370       380       390       400 
1edqa  ( 431 )    -gVkpgkIVVGTaM-darsVqaKGkyVldkqLgGLFSweIdadn------
1e15a  ( 278 )    egVpsakIVMGVpFddaesFkyKAkYIkqqqLgGVMFwhLGqdnr-----
1d2ka  ( 280 )    -gVpankIVLGMpLdtvkiAgkKAeYItkngMgGGMWweSssdkt-----
1e9la  ( 254 )    -gAasekLIVGFpA-nvrsFklkAqwLkdnNlGGAVVwpLDmDdfsgsfc
                      333bbbbbb   aaaaaaaaaaaaa    bbbbb 333        

                           410       420       430       440  
1edqa  ( 546 )    ----GdiLnsMNasLgNsagvq                      
1e15a  ( 411 )    ---nGdlLaALdrYFnaa-----dyddsqldmgtglrYtGvGpg
1d2ka  ( 386 )    --gneslVgtVVngLggtgkLeqreNElsYpeSvydnLkngMps
1e9la  ( 373 )    hqrhFPlTstLkgdLn----Ihsas                   
                       aaaaaaaaa                              


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