periplasmic binding protein -- sugar
|
class : alpha beta |
number of structures : 4 |
average size : 293 |
average PID : 24
% |
PDB
code |
start
residue |
start
chain |
end
residue |
end
chain |
name |
source |
resolution |
R-factor |
2dri
 |
1 |
- |
271 |
- |
D-ribose binding protein |
Escherichia coli |
1.60 |
19.40 |
1abe
 |
2 |
- |
306 |
- |
L-arabinose-binding protein |
Escherichia coli |
1.70 |
13.70 |
1gca
 |
1 |
- |
309 |
- |
D-galactose-binding periplasmic protein |
Salmonella typhimurium |
1.7 |
19 |
1rpj
 |
1 |
A |
288 |
A |
D-allose-binding protein |
Escherichia coli |
1.80 |
19.4 |
|
pir |
ali |
malform |
joy-html |
colour postscript |
postscript |
superimposed coordinates
(RasMol)
|
10 20 30 40 50
2dri ( 1 ) kdtIALVVStlnNpFFvsLkdgAqkeAdkl-gynLvvldSq--nnpakE
1abe ( 2 ) nlkLGFLVKqpeEpWFqtEwkfAdkAGkdl-gFeVikiaVp---dgekT
1gca ( 1 ) adtrIGVTIYkyddnFMsvVrkaIekdGksapdVqllmndSq--ndqskQ
1rpja ( 1 ) aaeYAVVLKTlsnpFWvdMkkgIedeaktl-gvsVdIfASpsegdfqsQ
bbbbbb aaaaaaaaaaaaaaaaa bbbbbb aaaa
60 70 80 90 100
2dri ( 47 ) lanVqdLtvrgTkILLINPTdSdaVgnAVkmAnqanipVITLDRqAt---
1abe ( 47 ) lnaIdsLaasgAkGFVICTPdpklGsaIvakArgydMkVIAVDDqFvnak
1gca ( 49 ) ndqIdvLlakgVkALAINLvdpaaAgtVIekArgqnvPVVFFNKePsrka
1rpja ( 49 ) lqlFedLSnknYkGIAFAPLssvnLVmPVArAwkkgIyLVNLDEkIdmdn
aaaaaaaa bbbb aaaaaaaaa bbbb
110 120 130 140 150
2dri ( 94 ) ----kgevvShIASdNvlGGkiAGdyIAkkag----------egAkVIEL
1abe ( 97 ) gkpmd--tvPLVMMAAtkIGerQGqeLykeMqkrg-Wd---vkeSAVMAI
1gca ( 99 ) LdsYd--kAyYVGTdskeSGviQGdlIakhwqanqgwdlnkdgkIQYVLL
1rpja ( 99 ) LkkagGNVeAfVTTdnvaVGakGAsfIidklga---------eGgeVAII
bbbbb aaaaaaaaaaaaaaaa bbbbbb
160 170 180 190 200
2dri ( 130 ) qGiagTSAareRgeGFqqAvaahk--Fn---vlasqpAdFdrikGlnvMq
1abe ( 141 ) Ta-neldTArrRTtgSmdaLkaag--FpekqIyqvpTksndipgAfdAAn
1gca ( 147 ) kGepgHpDAeaRttyVvkeLndkgIqTe---qLaldtAmWdtaqAkdkMd
1rpja ( 140 ) eGkagNaSGeaRrnGAteaFkkas-qIk---lvasqpAdWdrikAldvAt
b aaaaaaaaaaaaaaaa b bbbbbb aaaaaaaaa
210 220 230 240 250
2dri ( 175 ) nlLt-ahp--dVqAVFAQNDeMAlGAlrALqtag-ks-dVmVVGFDGTpd
1abe ( 188 ) smLv-qhpeVkhWLIVGMNDsTVlGGVrATegqgfkaadIIGIGING-vD
1gca ( 194 ) awLsgpnan-kIEVVIANNDAMAmGAveALkahn-ks-sIpVFGVDALpe
1rpja ( 186 ) nvLq-rnp--nIkAIYCANDtMAMGVaqAVanag-ktgkVlVVGTDGIpe
aaa bbbb aaaaaaaaaaaaa bbbbb aa
260 270 280 290 300
2dri ( 220 ) GekAVn---dgkLaATIaQlpdqIGakGVeTAdkvlkgekVq--------
1abe ( 236 ) AvsELskaqatGFyGSLLPSPdvHGykSSemLynwvakdvePp-------
1gca ( 241 ) AlalVk---sgaMaGTVlNdannQAkATfdLAknlAegkgAadgtswkie
1rpja ( 232 ) ArkmVe---agqMtATVAQnpadIGatGLklMvdaeksgkvipldkap--
aaaaaa bbbb aaaaaaaaaaaaaaaa
310 320
2dri ( 259 ) -akypv-dLklvvkq
1abe ( 279 ) -kftevtdvvlItrdnfkeeLekkglggk
1gca ( 288 ) nkiVrV-pYvgVDkdnLseftqk
1rpja ( 277 ) -efklv-dSilvt-q
bbbb bbb