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Align your sequence(s)

ABC transporter

class : alpha beta number of structures : 6 average size : 255 average PID : 25 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1b0u rasmol 5 A 261 A histidine transport ATP-binding protein hisp Salmonella typhimurium 1.50 18.5
1f3o rasmol 2 A 232 A hypothetical ABC transporter ATP-binding protein mj0796 Methanococcus jannaschii 2.7 20.4
1g29 rasmol 1 1 240 1 malk Thermococcus litoralis 1.90 21.1
1g6h rasmol 4 A 257 A ADP conformation of mj1267, an ATP- binding cassette of an ABC transporter Escherichia coli 1.6 21.7
1f2u rasmol 1 A 882 B rad50 ABC-ATPase Pyrococcus furiosus 1.6 23.8
1e69 rasmol 1 A 1164 A chromosome segregation smc protein, putative Thermotoga maritima 3.1 25
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : SMC_C  SMC_N  ABC_tran  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1b0ua  (   5 )      nkLhVidLhKrygg---heVLk-gVsLqAragdVISIIGssgSGKsTF
1f3oa  (   2 )        IkLknVtktykgeeiiyALk-nVnLnIkegEFVSI-gpsgSGKsT-
1g291  (   1 )     magVrLvdVwkvfg---evtaVr-eMsLeVkdgeFMILLGpsgCgkttT
1g6ha  (   4 )    tmeILrTenIvkyfg---efkALd-gVsIsVnkgdVTLIIGPngSGKsTL
1f2ua  (   1 )      MkLerVtVknFr-------sHs-dTvVeFke-gINLIIgqngSgksSL
1e69a  (   1 )      mrLkkLyLkGFk-------sFGrpslIgFsd-rVTAIvgpngsgksnI
                      bbbbbbbbb         bb bbbbb     bbbbb        aa

                           60        70        80        90        100 
1b0ua  (  49 )    LrCINFlekPs-------------------------egaIiVng----qn
1f3oa  (  48 )    LnIIGCldkPt-------------------------egeVyIdn----ik
1g291  (  46 )    LrMIAGleePs-------------------------rgqIyIgd----kl
1g6ha  (  50 )    InVITGflkAd-------------------------egrVyFen----kd
1f2ua  (  40 )    LdAILVGLYwpLrikdikkdeFtkv------gardTyIdLiFekdgtkYr
1e69a  (  41 )    idAIkWVFge--------kfdmIFagSenlppagsAyVeLvFeengeeit
                  aaaa                                bbbbbb      bb

                           110       120       130       140       150 
1b0ua  (  70 )    InLvr-dkd-------------gqlkVadknqlrlLrt-r-LtMVfqhfn
1f3oa  (  69 )    Tnd------------------------ldddeltkirrdk-IGfVfqqfn
1g291  (  67 )    VAD---pek-------------gifv-----ppkdR---d-Iamvfqsya
1g6ha  (  71 )    ITnk---------------------------epaeLyhyg-IVrtfqTpq
1f2ua  (  84 )    ItRrFlkgyssgeihaMkrlvgnewkhvtepsskaIsafMe---------
1e69a  (  93 )    VAreLkrt---gentyyln---gspv-----rlkdIrdrFa---------
                                                  aaaaaa            

                           160       170       180       190       200 
1b0ua  ( 104 )    LwshmtVleNVMeaPiqvl------------glskhdArerAlkyLakVg
1f3oa  (  94 )    LiplltAleNVelpLifkyr-----------gasgeerrkrAleCL-kAe
1g291  (  92 )    lyphmtVydNIAfPLklr-------------kvprqeIdqrVrevAelLg
1g6ha  (  93 )    pLkemtVleNLLIgeiCpgesplnSlfykkwipkeeemvekAfkiLefLk
1f2ua  ( 125 )    ------klIpyniFlnaIYIrqgqIdaiLesalareaalskIGelAseIF
1e69a  ( 123 )    ------gtGLGvdFy--SivgqgqIdrivn-------ayqrvnesFnrFI
                        aa  aa                       aaaaaaaaaaaaa  

                           210       220       230       240       250 
1b0ua  ( 142 )    Ideraqg------------------------kypvhLsggqqQrVSIAra
1f3oa  ( 134 )    Leerfan------------------------hkpnqLsggqqQrVAIAra
1g291  ( 129 )    L-telLn------------------------rkpreLsggqrqrVAlGra
1g6ha  ( 143 )    L-shLyd------------------------rkAgeLsggqmkLVeIGrA
1f2ua  ( 757 )    aeFTegkYseVvVraeenkvrlfVvweg-kerpltfLsggeriALGLAFR
1e69a  (1035 )    slLFfg--GeGrl-------eisIrkpgrrdqklslLsggekaLVGLAll
                                                   333  aaaaaaaaaaaa

                           260       270       280       290       300 
1b0ua  ( 168 )    LAme------PdVLLFDEPTsaLdpelvgeVlriMqqLAee-gkTMVVVT
1f3oa  ( 160 )    LAnn------PpIILAdePtgaLdsktgekI-qLLkkLNeedgkTVVVVT
1g291  ( 154 )    IVrk------PqVFLMdeplsnldaklrvrmraelkklqrqlgvTTIYVT
1g6ha  ( 168 )    lMtn------PkMIVMdepiagvapglAhdIFnhVleLkak-giTFLIIE
1f2ua  ( 806 )    LAmsLylageisLLILDePTpyLdeerrrkLitIMerYLkkIp-QVILVS
1e69a  (1090 )    FAlmeikp--SpFYVLdeVDspLddynAerFkrLLkenSkht--QFIVIT
                  aa          bbbbb       aaaaaaaaaaaaaa      bbbbb 

                           310       320       330       340       350 
1b0ua  ( 211 )    hemgFArhvSshVIFLh--qGkieeegdpeqVFgnp-qsprLqqflkgsl
1f3oa  ( 204 )    hdinvAr-fGerIIyLk--dGevereeklrgf                  
1g291  ( 198 )    hdqvEAmtMGdrIAVMn--rGvlqqvGspdeVydkp-antfVagfI    
1g6ha  ( 211 )    hrLdiVlnyIdHLYVMf--nGqiiaeGrgeeeIknvlsdpkVveiYige 
1f2ua  ( 855 )    hde-eLkdaAdhVirIslengsSkvevvs                     
1e69a  (1136 )    hnk-iVmeAAdlLHgVtmvngvSaIvpvev                    
                             bbbbbb    bbbbbb                       

                      
1b0ua  ( 258 )    kkle
1f3oa                 
1g291                 
1g6ha                 
1f2ua                 
1e69a                 
                      


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