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Align your sequence(s)

serine proteinase - eukaryotic

class : all beta number of structures : 27 average size : 233 average PID : 38 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1bbr rasmol 16 H 247 E thrombin Bos taurus 2.30 16.7
1ppb rasmol 16 H 247 H thrombin Homo sapiens 1.92 15.6
1hcg rasmol 16 A 251 A factor Xa Homo sapiens 2.20 16.8
1kig rasmol 16 H 251 H coagulation factor X Bos taurus 3.00 18.7
1fxy rasmol 16 A 246 A coagulation factor X Homo sapiens 2.15 18.0
2ptn rasmol 16 - 245 - trypsin Bos taurus 1.50 19.3
1mct rasmol 16 A 245 A trypsin Sus scrofa 1.60 16.7
1trm rasmol 16 A 245 A trypsin Rattus rattus 2.30 16.0
1a0j rasmol 16 A 245 A trypsin III Salmo salar 1.70 17.3
2tbs rasmol 16 - 245 - trypsin Salmo salar 1.80 16.4
1ab9 rasmol 16 B 245 C gamma-chymotrypsin Bos taurus 1.60 19.1
1ton rasmol 16 - 246 - tonin Rattus rattus 1.80 19.6
2pka rasmol 16 A 246 B kallikrein A Sus scrofa 2.00 22.0
1npm rasmol 16 A 243 A neuropsin Mus musculus 2.10 18.6
1azz rasmol 16 A 246 A brachyurin (collagenolytic protease) Uca pugilator 2.30 18.9
3est rasmol 16 - 245 - pancreatic elastase Sus scrofa 1.60 16.9
1a0l rasmol 16 A 245 A beta-tryptase Homo sapiens 3.00 19.7
1lmw rasmol 16 B 245 B urokinase-type plasminogen activator Homo sapiens 2.50 22.4
1a5i rasmol 1A A 244 A salivary plasminogen activator alpha 1 Desmodus rotundus 2.90 19.8
1a5h rasmol 16 A 244 A tissue plasminogen activator Homo sapiens 2.90 17.8
1fuj rasmol 16 A 243 A myeloblastin (PR3) Homo sapiens 2.20 N/A
1hne rasmol 16 E 243 E neutrophil elastase Homo sapiens 1.80 16.4
1a7s rasmol 1 - 225 - azurocidin Homo sapiens 1.12 N/A
3rp2 rasmol 16 A 243 A mast cell protease II Rattus rattus 1.90 19.1
1klt rasmol 16 - 245 - chymase (mast cell protease I) Homo sapiens 1.90 18.3
1dfp rasmol 16 A 243 A complement factor D Homo sapiens 2.40 14.8
1sgt rasmol 16 - 245 - trypsin Streptomyces griseus 1.70 16.1
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
SMART : Tryp_SPc  
PFAM : trypsin  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1bbr   (  16 )                 IveGqdAevglSpwQVMLfrk----spqellÇgASLI
1ppb   (  16 )                 IvegsdAeigmSpwQVMLfrk----spqellÇgASLI
1hcga  (  16 )                 IvggqeÇkdgeÇpwQALLIne-----enegfÇgGTIL
1kigh  (  16 )                 IVggrdÇaegeÇpwqAlLVne-----eneGfÇgGTIL
1fxya  (  16 )                 IvgGynÇkdgeVpwQAlLine-----enegfÇGGTIL
2ptn   (  16 )                 IvgGytÇgantVpyQVSLnsg-------yhfçGGSLI
1mcta  (  16 )                 IvgGytÇaansIpyQVSLnsg-------shfÇgGSLI
1trma  (  16 )                 IvgGytÇqensVpyQVSLnsg-------yhfçGGSLI
1a0ja  (  16 )                 IvgGyeÇrknsAsyQAsLqSg-------yhfÇgGSLI
2tbs   (  16 )                 IvgGyeÇkaysqahQVSLnsg-------yhfçGGSLV
1ab9   (  16 )                 IvnGeeAvpgswpwQVSLqdk-----tgfHfÇGGSLI
1ton   (  16 )                 IVgGykÇeknsqpwQVAVine--------ylÇGGVLI
2pka   (  16 )                 IIgGreÇeknsHpwQVAIyhy------ssfqçGGVLV
1npma  (  16 )                 ILegreÇiphsqpwQAALFqg------erliÇgGVLV
1azza  (  16 )                 IVggveAvpnswphQAALfId-d-----myfçGGSLI
3est   (  16 )                 VvgGteAqrnswpsQISLqyrs--gsswaHtÇGGTLI
1a0la  (  16 )                 IvggqeAprskWPWQVSLRvhg---pywmhfÇgGSLI
1lmwb  (  16 )                 IiGgefttienQpwFAAIYrrhrggs-vtYvçGGSLM
1a5ia  (   1A)    tçGlrkykepqlhstGglfTdItSHPWQAAIFAqnrrssgerFLÇGGILI
1a5ha  (  16 )                 IkgGlfadIasHpwQAAIfAkhrrspgerFlçGGILI
1fuja  (  16 )                 IvgGheAqphsrpyMASLQmr-gnp--GsHfÇGGTLI
1hnee  (  16 )                 IvggrrArphawpfMVSLqlr------ggHfÇGATLI
1a7s   (   1 )                 IvgGrkArprqfpfLASIQnq------grHfçgGALI
3rp2a  (  16 )                 IiggveSiphsrpyMAHLdIvtekg--lrviÇGGFLI
1klt   (  16 )                 IiggteSkphsrpyMAyLeIvtsng--pskfÇGGFLI
1dfpa  (  16 )                 IlggreAeaharpyMASVqln------gaHlÇGGVLV
1sgt   (  16 )                 VvgGtrAaqgeFpFMVrLs----------mgçGGALy
                                   bb        bbbbb          bbbbbbbb

                           60        70        80        90        100 
1bbr   (  48 )    sdrWVLTAAhÇL--lyppwdknftvdd-LlVrIgKhsrtryerkvEkism
1ppb   (  48 )    sdrwVLTAAhÇL--lyppwdknftend-LlVrIgKhsrtryerniEkism
1hcga  (  48 )    sefyILTAAhÇlyqAk----------r-fkVrVgdrnteqee-ggeavhe
1kigh  (  48 )    nefYVLTAAhÇlhqAk----------r-fTVRVGdrnteqee-gnemaHe
1fxya  (  48 )    sefYILTAAhÇlyqak----------r-fkVrVGdrnteqee-ggeavhe
2ptn   (  48 )    nsqWVVSAAhÇy--ks----------g-IqVrLgEdninvve-gnEqfis
1mcta  (  48 )    nsqWVVSAAhÇy--ks----------r-IqVrLGEhnidvle-gnEqfin
1trma  (  48 )    ndqWVVSAAhÇy--ks----------r-IqVrLGEhninvle-gnEqfvn
1a0ja  (  48 )    sstWVVSAAhÇy--ks----------r-IqVrLGEhniavne-gteqfId
2tbs   (  48 )    nenWVVSAAhÇy--ks----------r-VeVrLGEhnikvte-gSeqfIs
1ab9   (  48 )    nenWVVTAAhÇg-Vtt----------s-dvVVAgEfdqgsss-ekiqklk
1ton   (  48 )    dpsWVITAAhÇy--sn----------n-YqVlLGrnnLfkde-pfaqrrl
2pka   (  48 )    npkWVLTAAhÇk--nd----------n-YeVwLGrhnLfene-ntaqffg
1npma  (  48 )    gdrwVLTAAhÇk--kq----------k-YsVrLgDhslqs   qpeqeiq
1azza  (  48 )    spewILTAAhÇMd--------gAg--f-VdVvLgAhnIredea-tqvtiq
3est   (  48 )    rqnWVMTAAhÇV-dr------el---t-FrVVVgEHnlnqnN-gtEqyVg
1a0la  (  48 )    hpqWVLTAAhÇVGpd------vkdlaa-LrVQlReQhLyy----qdqllp
1lmwb  (  48 )    swVISAThÇFi-------dypkked-YIVyLGRsrlnsnt-qgemkFe
1a5ia  (  48 )    ssçwVLTAAhÇFq-------esYlpdq-LkVVLGrtyrvkpg-eeeqtfk
1a5ha  (  48 )    ssçwILSAAHÇFq-------erfpphh-LtVILGRtyrvvpg-eeeqkfe
1fuja  (  48 )    hpsfVLTAAhÇLr--------dipqrl-VnVVLGAhnVrtqep-tQqhFs
1hnee  (  48 )    apnfVMSAAhÇVa--------nvnvra-VrVVLgAhnlsrrep-trqvfa
1a7s   (  32 )    harFVMTAAsÇF            pgv-StVVLGAydlrrrerqsrqtFs
3rp2a  (  48 )    srqfVLTAAhÇkg--------r-----eItViLgAhdvrkres-tqqkIk
1klt   (  48 )    rrnFVLTAAhÇag--------r-----sItVTLgAhniteeed-twqkLe
1dfpa  (  48 )    aeqwVLSAAhÇledaa--------dgk-vqVlLGAhslsqpep-skrlYd
1sgt   (  48 )    aqdiVLTAAhÇVs-------gsgnnts-itAtGgVvdlqsg---aAvkVr
                  b  bbbb 333                  bbbb             bbbb

                           110       120       130       140       150 
1bbr   (  85 )    LdkiyiHprYnwk---eNl-drDIALLkLk----rpielsdyIhpVclPd
1ppb   (  85 )    LekIyihprYnwr---eNl-DrDIALMkLk----kpVafsdyIhpVclPd
1hcga  (  85 )    vevvIkHnrFtk----ety-dfDIAVLrLk----tpItfrmnVapAclPe
1kigh  (  85 )    VemtVkhsrFvk----ety-dfDIAVLrLk----tpIrfrrnVapAclPe
1fxya  (  85 )    VevvikhnrFtk----ety-dfDIAVLrLk----tpItfrmnVapAslPt
2ptn   (  85 )    asksivhpsyns----ntl-nnDIMLIkLk----saAslnsrVasislPt
1mcta  (  85 )    Aakiithpnfng----ntl-dnDIMLIkLs----spAtlnsrVatVslPr
1trma  (  85 )    Aakiikhpnfdr----ktl-nnDIMLIkLs----spVklnarVatValPs
1a0ja  (  85 )    SvkVimhpsyns----rnl-dnDIMLIkLs----kpAslnsyVstValPs
2tbs   (  85 )    SsrVirhpnyss----yni-dnDIMLIkLs----kpAtlntyVqpvalPt
1ab9   (  85 )    IakvfkNskyns----lti-nnDITLLkLs----taAsfsqtVsaVclPs
1ton   (  85 )    VrqsfrhpdYipl pvhdh-snDLMLLhLs----epAditgGVkvidlPt
2pka   (  85 )    VtadfphpgfnlsadgkDy-shDLMLLrLq----spAkitdaVkvlelPt
1npma  (  85 )    vaqsiqhpcynnsnp-edh-shDIMLIrLq----nsAnlgdkVkpVqlAn
1azza  (  85 )    Stdftvhenyns----fvi-snDIAVIrLp----vpvtltaAIatVgLPs
3est   (  85 )    VqkivvhpyWntdd--vaa-gyDIALLrLa----qsVtlnsyVqlgvlpr
1a0la  (  85 )    VsriivhpqFyt----aqi-gADIALLeLe----epVkvsshvhtVtlPp
1lmwb  (  85 )    VenLilhkdysad---tlAhhnDIALLkIrskegrçAqpsrtiqtIclPs
1a5ia  (  85 )    Vkkyivhkefd-d---dty-nnDIALLqLksdspqÇAqesdSVraIçlPe
1a5ha  (  85 )    Vekyivhkefd-d---dty-dnDIALLqLksdssrÇAqessvVrtVclPp
1fuja  (  85 )    Vaqvfln-nyda----enk-lnDILLIqLs----spAnlsasVatVqLPq
1hnee  (  85 )    Vqrifed-gydp----vnl-lnDIVILqLn----gsAtinanVqvAqlPa
1a7s   (  73 )    Issmsen-gydp----qqn-lnDLmLLQLd----reAnltssVtiLpLPl
3rp2a  (  85 )    Vekqiihesyns----vpn-lhDIMLLkLe----kkVeltpaVnvVplPs
1klt   (  85 )    VikqfrhpkYnt----stl-hhDIMLLkLk----ekAsltlaVgtlpfPs
1dfpa  (  85 )    Vlravphpdsqp----dti-dhDLLLLqLs----ekAtlgpavrplpwqr
1sgt   (  85 )    StkVlqApgyn-------gtGkdWALIkLa----qpIn----qptLkIAt
                  bbbbbb                  bbbbb                     

                           160       170       180       190       200 
1bbr   ( 126 )    kqtAakLlhagfkgrVTgWGnrretwtt svaeVqP--svLQvvnLpLVe
1ppb   ( 126 )    retAasllqagykgrVTGWgnlketwta-nvgkgqP--svLqvvnLpiVe
1hcga  ( 125 )    rdwAestLmtqktGiVSGFgrth            s--trLkmLeVpyvd
1kigh  ( 125 )    kdwAeatLmtqktGiVSgFGrthek------g-rls--stLkmLeVpyvd
1fxya  ( 127 )    -----apPatgtkÇlISGwGntass------gadyp--delqÇLdApVls
2ptn   ( 127 )    -----sçasagtqÇlISGWGNtkss------gtsyp--dvLkÇLkApIls
1mcta  ( 127 )    -----sçaaagteÇlISgWGntkss------gssyp--slLqÇLkApVls
1trma  ( 127 )    -----sçapagtqÇlISGWGntlss------gvnep--dlLqÇLdApllp
1a0ja  ( 127 )    -----sçassgtrÇlVSGwGNlsgs------ssnyP--dtLrÇLdLpils
2tbs   ( 127 )    -----sçapagtmÇtVSGWgnTmss-------tads--dkLQÇLnIpIls
1ab9   ( 126 )    as---ddfaagttÇvTTGWGltry         ntp--drLqqasLpLls
1ton   ( 128 )    -----kePkvgstÇlASGWGStnps------emvvs--hdLqÇVnIhLls
2pka   ( 127 )    -----qepelgstÇeASGWGSiepGpd----dfefp--deIqçVqLtLlq
1npma  ( 127 )    -----lçPkvgqkÇiISGWGTvtSp------qenfp--ntLnçaeVkIys
1azza  ( 127 )    -----tdvgvgtvVtPTGWGlpsd------salgis--dvLrqVdVpIms
3est   ( 126 )    ag---tilannspÇyITGWGltrtn-------gqla--qtLqqAyLpTvd
1a0la  ( 126 )    as---etFppgmpÇwVTgWgdvdnd-------erLpppfpLkQVkVpIme
1lmwb  ( 126 )    my---ndpqfgtsÇeITGFGkenstdy------lyp--eqLKmtvVkLis
1a5ia  ( 126 )    an---lqlpdwteÇeLSGYGkhksssp------fyS--eqLkEghVrlYp
1a5ha  ( 126 )    ad---lqlpdwteÇeLSGYGkhealsp------fyS--erLkeAhVrlyp
1fuja  ( 126 )    qd---qpVphgtqÇLAMGWGrvga------hd-ppA--qvLqeLnVtVvt
1hnee  ( 126 )    qg---rrlgngvqÇlAMGWGllgr------nr-giA--svLQeLnVtVVt
1a7s   ( 113 )    qn---atVeagtrÇqVAgWGSqrs-------gGrls--rfPrfvnVtVtp
3rp2a  ( 126 )    ps---dfihpgamÇwAAGWGktgv------rd-pts--ytLreVeLrImd
1klt   ( 126 )    qf---nfVppgrmÇrVAGWGrtgv------lk-pgs--dtLqeVkLrLmd
1dfpa  ( 127 )    vd---rdvapgtdVAGWGivnh------ag-rrP--dsLqhvlLpVld
1sgt   ( 128 )    tt---aynq--gtFtVAGWGAnre-------gGsqq--ryLlkanVpfvs
                              bbbbbb                       bbbbbb   

                           210       220       230       240       250 
1bbr   ( 165 )    rpvÇka-sTr---------iritdnMfÇAgykpgeg---krGdegDsG
1ppb   ( 165 )    rpvÇkd-sTr---------irItdNMfÇAgykpdeg---krGdaÇegDsG
1hcga  ( 165 )    rnsÇkl-sss---------fiItqnMFÇAGydt------kqedAÇqgDsG
1kigh  ( 165 )    rstÇkl-sss---------ftItpnMfÇAGydt------qpedaÇqgDsG
1fxya  ( 165 )    qakÇea-sYp---------gkItsnMFÇVGfle------GgkDSçqgDsG
2ptn   ( 165 )    dssÇks-aYp---------gqItsnMfÇAGyle------GgkDSÇqgDsG
1mcta  ( 165 )    nssÇks-sYp---------gqItgnMiÇVgflq------GgkdSÇqgDsG
1trma  ( 165 )    qadÇea-sYp---------gkItdNMVÇVGfle------GgkDSÇqgDsG
1a0ja  ( 165 )    sssÇns-AYp---------gqitsnMfÇAGfme------GgkDSÇqgDSG
2tbs   ( 165 )    ysdÇnd-sYp---------gmItnAMfÇAGyle------GgkDSÇqgDSG
1ab9   ( 165 )    ntnÇk--kyw--------gtkIkdaMIÇAGas--------gvssÇmgDsG
1ton   ( 165 )    nekÇie-Tyk---------dnvtdvMLÇAGeme------GgkdTÇagDsG
2pka   ( 165 )    ntfÇad-aHp---------dkVteSMLÇAGylp------ggkDTÇmgDsG
1npma  ( 165 )    qnkÇer-aYp---------gkIteGMVÇAgssn-------gADtçqgDsG
1azza  ( 165 )    nadÇda-vy----------giVtdGnIÇIdSt-------ggkGTÇngDsG
3est   ( 165 )    yaiÇssssyw--------gstVknsMvÇAggd-------gvrSGÇqgDSG
1a0la  ( 165 )    nhiÇda-kYHlgaytgddvriVrddMLÇAGnt--------rrDSÇqgDSG
1lmwb  ( 165 )    hreÇqqphyY--------gseVttkMlÇAadp------qwktdSÇqGDsG
1a5ia  ( 165 )    ssrçapkfL--------fnktvtnnMlÇAgDtrsgeiypnvhdAÇqgDsG
1a5ha  ( 165 )    ssrçtsqhL--------lnrtVtdnMlÇAgDtrsggpqanlHDqGDSG
1fuja  ( 165 )    -ffÇr------------------phNIÇTfvp------rrkAGIÇfgDsG
1hnee  ( 166 )    -slÇr------------------rsNvÇTlvr------grqAGVÇfgDsG
1a7s   ( 151 )    edqÇr------------------pnNVÇTgvl------trrGGnGDGG
3rp2a  ( 165 )    ekaÇv-----------dyryYeykfQVÇVgsp------ttlraAfmgDsG
1klt   ( 165 )    pqaÇs-----------hfrdFdhnlQLÇVGnp------rktkSAFkgDSG
1dfpa  ( 165 )    ratÇnrrthh--------dgaIterLMÇAeSn--------rrDSÇkgDSG
1sgt   ( 165 )    daaÇrs-aY--------gneLvaneEIÇAGypd-----tggvDqgDsG
                  aaaa                     bbbb                     

                           260       270       280       290       300 
1bbr   ( 197 )    GPFVMkSpynnrwyQMGIvSwge--gçdrdgkYgFYTHVfrLkkwIqkVi
1ppb   ( 197 )    GPFVMkSpfnnrwyQMGIVSwge--GÇdrdgkYgFYThVfrlkkwIqkvi
1hcga  ( 197 )    GPHVTrfk--dtyfVTGIvSwge--gçArkgkygIYTkVTaFlkWIdrSm
1kigh  ( 197 )    GPHVTrfk--dtyfVTGIVSwge--gçarkgkfgVYTkVSnFLkWIdkIm
1fxya  ( 197 )    GPVvÇn------gqLQGVVSwgd--gÇAqknkPgVYTkVynYvkwIknti
2ptn   ( 197 )    GPVvÇs------gkLQGIVSwgs--gÇAqknkPGVYTknYvswIkqti
1mcta  ( 197 )    GPVvÇn------gqLQGIVSwgy--gÇAqknkPgVYTknYvnwIqqti
1trma  ( 197 )    GPVvÇn------geLQGIVSwgy--gçAlpdnPGVYTknyvdwIqdti
1a0ja  ( 197 )    GPVvÇn------gqLQGVVSwGy--gÇaqrnkPGVYTknYrswIsstm
2tbs   ( 197 )    GPVvÇn------geLQGVVSwGy--gçaepgnPGVYAkVÇiFsdwLtstm
1ab9   ( 197 )    GPLVÇkkn--gawtLVGIVSwgss--tÇststPgVYArVtaLVnwVqqtl
1ton   ( 197 )    GPLiÇd------gvLQGITSggat-pÇAkpktPaIYakLikFtswIkkvm
2pka   ( 197 )    GPLiÇn------gmWQGItSwght-pÇgsankPSIYTkLifYldwIddti
1npma  ( 197 )    GPLVÇd------gmLQGITSwgsd-pçGkpekPGVYTkIÇrYttwIkktm
1azza  ( 197 )    GPLNyn------glTYGItSfgaaagçeag-yPdAFTrVtyFldwIqtqT
3est   ( 197 )    GPLHÇlvn--gqyaVHGVTSfvSrlgÇnvtrkPTVFTRVSayiswInnvi
1a0la  ( 197 )    GPLVÇkvn--gtwlQAGVVSwGe--gÇaqpnrpGIYTrVtyYldwIhhyV
1lmwb  ( 197 )    GPLVÇslq--grmtLTGIvSwgr--gÇAlkdkPgVYTrVShFlpwIrsht
1a5ia  ( 197 )    GPLVÇmnd--nhMTLlGIiSwgv--gÇgekdvPgVYTkVtnYlgwIrdnm
1a5ha  ( 197 )    GPLVÇlnd--grmTLvGIISWGl--gÇGqkdvPGVYTkVtnYldwIrdnm
1fuja  ( 197 )    GPLIÇd------giIQGIDSfvi-wAtrlfPdFFTrVAlyVdwIrstl
1hnee  ( 197 )    SPLvÇn------glIHGIASfvr-ggçasglyPdAFApVAqfvnwIdsii
1a7s   ( 177 )    TPLvÇe------glAHGVASfSl-gGr--gpDFFTrVAlFrdwIdgvl
3rp2a  ( 197 )    GPLlÇa------gvAhGIvSyghp--dak--PpaIFTRVStYvpwInavi
1klt   ( 197 )    GPLlÇa------gvAQGIVSyGrs--dAk--PPAVFTRIShYrpwInqil
1dfpa  ( 197 )    GPLvÇg------gvLeGVVTSg-srGnrkkPgiYTRVASYaawIdsvl
1sgt   ( 197 )    GPMFrkdn-adewiQVGIvSwgy--gçarpgyPgVYTeVStfAsaIasaA
                   bbbb        bbbbbbbb            bbbbb 33 aaaaaaaa

                           
1bbr   ( 243 )    drlgs    
1ppb   ( 243 )    dqfge    
1hcga  ( 243 )    ktrglpkak
1kigh  ( 243 )    karagaags
1fxya  ( 243 )    aans     
2ptn   ( 243 )    asn      
1mcta  ( 243 )    aan      
1trma  ( 243 )    aan      
1a0ja  ( 243 )    ssn      
2tbs   ( 243 )    asy      
1ab9   ( 243 )    aan      
1ton   ( 243 )    kenp     
2pka   ( 243 )    tenp     
1npma  ( 243 )    d        
1azza  ( 243 )    gitp     
3est   ( 243 )    asn      
1a0la  ( 243 )    pkk      
1lmwb  ( 243 )    kee      
1a5ia  ( 243 )    hl       
1a5ha  ( 243 )    rp       
1fuja  ( 243 )    r        
1hnee  ( 243 )    q        
1a7s   ( 218 )    n-npgpgpa
3rp2a  ( 243 )    n        
1klt   ( 243 )    qan      
1dfpa  ( 243 )    a        
1sgt   ( 243 )    rtl      
                           


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