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Align your sequence(s)

Alpha amylase, C-terminal domain

class : all beta number of structures : 21 average size : 85 average PID : 21 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1hvx rasmol 394 A 483 A Alpha amylase Bacillus stearothermophilus 2.00 15.4
1vjs rasmol 394 - 482 - Alpha amylase Bacillus licheniformis 1.7 19.9
2aaa rasmol 382 - 476 - Acid alpha amylase Aspergillus niger 2.1 N/A
7taa rasmol 382 - 476 - Taka amylase Aspergillus oryzae 1.98 15.9
1gjw rasmol 573 A 636 A Maltodextrin glycosyltransferase Thermotoga maritima 2.1 19.7
1sma rasmol 506 A 588 A Maltogenic amylase Thermus sp. 2.80 20.9
1uok rasmol 480 - 558 - Oligo-1,6-glucosidase Bacillus cereus 2.0 19.2
1g5a rasmol 555 A 628 A Amylosucrase Neisseria polysaccharea 1.40 18.9
1bvz rasmol 503 A 585 A Alpha amylase II Thermoactinomyces vulgaris R-47 2.60 19.6
1ciu rasmol 407 - 495 - Cyclodextrin glycosyltransferase Thermoanaerobacterium thermosulfurigenes EM1 2.3 N/A
1qhp rasmol 408 A 495 A Alpha amylase Bacillus stearothermophilus 1.70 15.3
1pam rasmol 407 A 496 A Cyclodextrin glucanotransferase Bacillus Sp. Strain 1011 1.8 16.1
1d3c rasmol 407 A 496 A Cyclodextrin glycosyltransferase Bacillus circulans 1.78 22.0
1cgt rasmol 407 - 494 - Cyclodextrin glycosyltransferase Bacillus circulans, strain 8 2.0 16.6
1cyg rasmol 403 - 491 - Cyclodextrin glucanotransferase Bacillus stearothermophilus 2.5 15.4
1bag rasmol 348 - 425 - Alpha amylase Bacillus subtilis 2.5 19.8
1smd rasmol 404 - 496 - Amylase Homo sapiens 1.6 18.4
1hx0 rasmol 404 A 496 A Alpha amylase Sus scrofa 1.38 N/A
1jae rasmol 379 - 471 - Alpha amylase Tenebrio molitor 1.65 17.7
1g94 rasmol 355 A 448 A Alpha amylase Pseudoalteromonas haloplanctis 1.74 15.6
1ava rasmol 347 A 403 A Alpha amylase 2 Hordeum vulgare 1.9 20.8
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : alpha-amylase_C  
CAZy : GH_13  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1hvxa  ( 394 )    ya-ygtqhdyld---hsdiiGwTreGvtekpgSGlAALiTd----gpggs
1vjs   ( 394 )    ya-ygaqhdyfd---hhdivGwTreGdssvanSGlAALiTd----gpgga
2aaa   ( 382 )       yandafytd----snTiAmakgts---g-sqvItVlSnkgssGssyt
7taa   ( 382 )       yknwpIykd----dtTiAmrkgtd---g-sQiVtIlSnkgasgdsyt
1gjwa  ( 573 )       gkfenltt-----kdLvmySyekng----qkiviAaNvgk---epke
1smaa  ( 506 )       gdvaf-ltad-devnhlVyaktdg---n-etvmiIiNrsn---eaae
1uok   ( 480 )       gsydlile---nnpsIfAyvrtyg---v-eklLvIaNfta---eeci
1g5aa  ( 555 )        rlvtfn---TnnkhIiGyirn-------nalLAFgNfse---ypqt
1bvza  ( 503 )       gnvrswhadk-qa-nLyAfVrtvq---d-qHvGvVlNnrg---ekqt
1ciu   ( 407 )       gttqqrwi----nndVyIyErkfg---n-nVaLvAiNrnls--tsyn
1qhpa  ( 408 )       gtttqrwi----nndVyIyErkff---n-dVvLvAiNrntq--ssys
1pama  ( 407 )       gstherwi----nndViIyErkfg---n-nVaVvAiNrnmn--tpas
1d3ca  ( 407 )       gstqerwi----nndVlIyErkfg---s-nVaVvAvNrnln--apas
1cgt   ( 407 )       gstqqrwi----nndVyVyErkfg---k-sVaVvAvNrnls--tsas
1cyg   ( 403 )       gdteqrwi----ngdVyVyErqfg---k-dVvLvAvNrsss--snys
1bag   ( 348 )       qpeels-n-PngnnqIfMnqr--g---s-h-gVvLaNags---ssvs
1smd   ( 404 )       qpftnwydng---snQvAfGr--g---nr--gFiVfNnDd---wtFs
1hx0a  ( 404 )       qpfanwwdng---snQvAfGr--g---nr--gFiVfNnDd---wqLs
1jae   ( 379 )    g--tqvenwwsnd---dnqiAfSr--g---sq--gFvAfTng----gdLn
1g94a  ( 355 )    n--wavtnwwdnt---nnqiSfGr--g---ss--gHmAiNked---stLt
1avaa  ( 347 )    hneSklqiiead----adLyLAeidg-------kvIvklgpry-------
                        bbbb        bbbbbb          bbbbbb        bb

                           60        70        80        90        100 
1hvxa  ( 436 )    kwMyVGkqHagkvFyDltgnrs---------dtvtInsdGwG-eFkVngg
1vjs   ( 436 )    krMyVGrqnagetWhDitgnrs---------epvvInseGwG-eFhVngg
2aaa   ( 421 )    ltLsgSgYtsgtkLiEaytç-----------tsvtVdssgdI-pVpMasg
7taa   ( 421 )    lsLsgAgYtagqqLTEvigç-----------ttvtVgsdgnV-pVpMagg
1gjwa  ( 608 )    itGg---------rVwng-----------kwsdee--------kvvLkpl
1smaa  ( 544 )    IpMpida-rG-kwLvnlltg-----------erfaAea--etlcvsLppy
1uok   ( 517 )    FeLpe-disy-sevellihn-----------ydvengp--I-enItLrpy
1g5aa  ( 588 )    VtahtLqamp-fkahDligg-----------ktvsLn-----qdltLqpy
1bvza  ( 541 )    VlLqvpesgg-ktWlDcltg-----------eevhgkq--gqLkLtLrpy
1ciu   ( 444 )    ItgLyTaLpa-gtytDvlgg----ll---nGnsIsVasdgsVtpftLsag
1qhpa  ( 445 )    IsgLqTaLpn-gsyaDylsg----ll---gGngIsVs-ngsVasftLapg
1pama  ( 444 )    ItgLvTsLpr-gsynDvlgg----il---nGntLtVgagGaAsnftLapg
1d3ca  ( 444 )    IsgLvTsLpq-gsynDvlgg----ll---nGntLsVgsggaAsnftLaag
1cgt   ( 444 )    ItgLsTsLpt-gsytDvlgg----vl---nGnnItSt-ngsInnftLaag
1cyg   ( 440 )    ItgLfTaLpa-gtytDqlgg----ll---dGntIqVgsngsVnafdLgpg
1bag   ( 383 )    In-taTkLpd-grydNkag-----------agsFqVn-dgkLt-gtInar
1smd   ( 438 )    lt-lqTgLpa-gtYÇDvisgdkin--gtgikIyVsddgkA-hFsIsns
1hx0a  ( 438 )    st-LqTgLpg-gtYÇDvisgdkvg--nsÇtgikVyVssdgtA-qFsIsns
1jae   ( 413 )    qn-lnTgLpa-gtYÇDvisgelsg--gsÇtgksVtVgdngsA-dIsLgsa
1g94a  ( 390 )    at-VqTdMas-gqYÇNvlkgelsadaksÇsgevitVnsdgtI-nLnigaw
1avaa  ( 379 )    ----dVgnlipggFkvaahgn-----------------------------
                  b           bbb                  bb         bbb   

                           110       120 
1hvxa  ( 476 )    ---svSvWVPr           
1vjs   ( 476 )    ---svSiYVq            
2aaa   ( 459 )    ---lprvLlp-asvVdsssg
7taa   ( 459 )    ---lprvLyP-teklagskiçs
1gjwa  ( 630 )    ---efAlVvq            
1smaa  ( 579 )    ---gfvlyaVes----w     
1uok   ( 551 )    ---EaMvFkLk           
1g5aa  ( 621 )    ---qvmwLeia           
1bvza  ( 577 )    ---qgMiLwNgr          
1ciu   ( 486 )    ---EvAvWqyvss         
1qhpa  ( 486 )    ---AvSvWqysts         
1pama  ( 486 )    ---GtAvWqyttd---a     
1d3ca  ( 486 )    ---GtAvWqytaa---t     
1cgt   ( 485 )    ---AtAvWqytta         
1cyg   ( 482 )    ---evGvWaysat         
1bag   ( 418 )    ---svAvLypd           
1smd   ( 483 )    aedpfiaIh--aeSkl      
1hx0a  ( 483 )    aedpfIaIh--aeSkl      
1jae   ( 458 )    eddgvLaIh--vnakl      
1g94a  ( 437 )    ---daMaIh--knakln     
1avaa  ( 396 )    ---dyavweki           
                      bbbbb             


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