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Align your sequence(s)

porin

class : membrane bound all beta number of structures : 4 average size : 315 average PID : 25 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1pho rasmol 1 - 340 - phosphoporin (phoe) Escherichia coli 3.00 22.2
2omf rasmol 1 - 340 - matrix porin (ompf) Escherichia coli 2.40 16.70
2por rasmol 1 - 301 - porin Rhodobacter capsulatus 1.8 18.6
1prn rasmol 1 - 289 - porin Rhodopseudomonas blastica 1.96 17.6
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Gram-ve_porins  
other info key to JOY annotation | show related PDB structures

                          10        20        30        40        50  
1pho  (   1 )    aeiynkdgnkldvyGkvkaMhymsd-----naskdgdqsyirfGfkgetq
2omf  (   1 )    aeiynkdgnkvdlyGkaVgLhyfSkgnGenSyggngdmtyarlGfkgetq
2por  (   1 )             evklsgdarmGvmynGd-------dwnfssrsrvlftmsgt
1prn  (   1 )             eislnGYgrfGlqyvedrgvgl-edtiissrlrinivgtte
                           bbbbbbbbbbbbb            bb  bbbbbbbbbbb

                          60        70        80        90        100 
1pho  (  51 )    indqltgygrweAefagnkae-sdt-aqqktrlafaglkykdlGsfdygr
2omf  (  51 )    insdltgygqweyNfqgnnsegadaqtgnktrlafaglkyadvgsfdygr
2por  (  35 )    tdsgl--efgasfk--ahes--vgae---tgedgtvflsga-fgkiemgd
1prn  (  41 )    tdqgvtfgaklrmQwddgdafa-----gtagNaaqfwtsyng-vtvsvgN
                      bbbbbbbbbbb                  bbbbbb   bbbbbb 

                          110       120       130       140       150 
1pho  ( 101 )    nlGALyd--VEawTdmFPefGGdSSAq---------tdNFMTkrAsgLaT
2omf  ( 101 )    nyGVVyd--AlgyTdmLpefGgd-tAy---------sdDFFVGrVggVaT
2por  (  75 )    AlGASEal-FgdLyeVGYtdLddrgGNd---IpYLTGderlTaedNpVlL
1prn  (  85 )    VdTAFdsValTydSeMGYeasSfGdAqSsffaynskydasgaldnYnGiA
                      aa  a                                    bbbb

                          160       170       180       190       200 
1pho  ( 139 )    yrNtdffgvidGlnlTlQyQgknenrdvkkQNgdgfGtSltydfGgsdfA
2omf  ( 139 )    yrNsnffglvdglnfAvQyLgknerdtarrSNGdgvggSisyeye--gfG
2por  ( 121 )    ytysa-----gafsvAasmSdgkvgets-eddaqEmAvAaaytfg--nyt
1prn  ( 135 )    vtysi-----sgvnlylSyVdpdqtvdsslv-teEfGiAadwsnd--mis
                 bbbb        bbbbbbbb              bbbbbbbbbb    bb

                          210       220       230       240       250 
1pho  ( 187 )    iSgAyTnSdRTneQnlqsrGtgkrAeAwAtGlkyda-nniylAtFySeTr
2omf  ( 187 )    iVGAyGaAdRTnlQeaqpLGngkkAeQwAtGlkyda-nniylAaNygetr
2por  ( 163 )    vglGyEkIdSpdta------lmadMeQlElAaiakf-gatnvkaYyAdge
1prn  ( 177 )    lAaAyTt-dAggiv---------dNdIaFvGaaykfndaGtvglNwYdNg
                 bbbbbbbbb               bbbbbbbbbbbb   bbbbbbbbbbb

                          260       270       280       290       300 
1pho  ( 236 )    ------kMTPIt------ggFAnkTqNfEaVaQyqfdfglrpSlgyVlSk
2omf  ( 236 )    ------nATpItnkftntsgFAnkTqdvLlVaQyqfdfglrpSiAyTkSk
2por  ( 206 )    LDrdfAravF-dltpvaaaAtavdHkAyGlSvdstfg-attvggYvQvLd
1prn  ( 217 )    ------ls--------------tAgdQvTlYgnyafg-attvraYvSdId
                                        bbbbbbbbbbb     bbbbbbbbbbb

                          310       320       330       340       350 
1pho  ( 280 )    GkdIegigdedlvnYiDvgatyyfnknmsaFvDykinqLdsdNkLninnd
2omf  ( 280 )    AkdVegigdVdlvnYfEvGatyyfnknmstyvDyIiNqIdsdnkLgvGsd
2por  ( 254 )    Id------tIddVtYyGlGasydlgggasivGGiAdNdlp-------nSd
1prn  ( 246 )    ra------gad--tAyGiGadyqfaegvkvSgSvQsGFa---------ne
                 b         bbbbbbbbbbbbb    bbbbbbbbbb             

                          360 
1pho  ( 330 )    dIvAvgmtyqf
2omf  ( 330 )    dTVAvGivyqf
2por  ( 291 )    mVADlGVkfkF
1prn  ( 279 )    tvadvGvrfdf
                  bbbbbbbbbb


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