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Align your sequence(s)

matrix metalloproteinase

class : alpha plus beta number of structures : 6 average size : 164 average PID : 55 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1mnc rasmol 106 - 263 - neutrophil collagenase Homo sapiens 2.10 17.6
1hfc rasmol 107 - 263 - fibroblast collagenase Homo sapiens 1.56 17.4
1mmp rasmol 100 A 264 A matrilysin Homo sapiens 2.30 18.0
1bqo rasmol 83 A 251 A stromelysin-1 Homo sapiens 2.3 22.9
456c rasmol 110 A 269 A collagenase-3 (mmp-13) Homo sapiens 2.4 21.58
1bqq rasmol 114 M 287 M matrix metalloproteinase-14 (membrane-type matrix metalloproteinase 1) Homo sapiens 2.75 18.9
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
SMART : ZnMc  
PFAM : Peptidase_M10  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1mnc   ( 106 )          gpkwertnLtyrirnyTpqlseaeVeraIkdAFelWsvaSpLiF
1hfc   ( 107 )           prweqthLtYrIenyTpdlpradVdhaIekAFqlWsnvTpLtF
1mmpa  ( 100 )    yslfpnspkwtskvVtyrIvsyTrdlphitVdrlVskALnmWgkeIpLhF
1bqoa  (  83 )    frtfpgipkwrkthLtYrIvnyTpdlpkdaVdsaVekALkvWeevTpLtF
456ca  ( 110 )          tlkwskmnLtYrIvnyTpdMthseVekaFkkAFkvWsdvTpLnF
1bqqm  ( 114 )        iqGlkwqhneItFCIqnyTpkvgeyaTyeaIrkAFrvWesaTpLrF
                               bbbbbb        aaaaaaaaaaaaaaaa     bb

                           60        70        80        90        100 
1mnc   ( 150 )    tgisq--------geAdInIAFyqrdhgdgspFdGpngilAhAfqPgqgi
1hfc   ( 150 )    tkvse--------gqAdImIsFvrgdhrdnspFdgpggnLAhAfqPgpgi
1mmpa  ( 150 )    rkvvw--------gtAdImIgFargahgdsypFdgpgntLAhAfaPgtgl
1bqoa  ( 133 )    srlye--------geAdImIsFavrehgdfypFdGpgnvlAhAyaPgpgi
456ca  ( 154 )    trlhd--------giAdImIsFgikehgdfypFdGpsglLAhAfpPgpny
1bqqm  ( 160 )    revpyAyireghekqadIMIfFaegfhgdstpFdgeggflAhAyfPgpni
                  bb               bbbbbb                 bbb       

                           110       120       130       140       150 
1mnc   ( 192 )    gGdAhFDaeEtWtnts---anyNLfLVAAhEFGhSLGlahssdpgAlMyp
1hfc   ( 192 )    gGdAhFDedErWtnnf---reynLhRVAAHELGhSLGlshstdigALMyp
1mmpa  ( 192 )    gGdAhFDedErWTdGss--lGiNFlyAATHELGhSLGMghSsdpnAVMyp
1bqoa  ( 175 )    nGdAhFDddEqWtkdt---tgtNLfLVAAHEIGhSLGLfhSanteALMyp
456ca  ( 196 )    gGdAhFDddEtWtsss---kgynLfLVAAHEFGhSLGldhskdpgALMfp
1bqqm  ( 210 )    gGdTHFDsaEpWtvrnedlngndIFLvAVhELGhALGLehssdpsAiMap
                     bbbb                aaaaaaaaaaaa               

                           160       170       180 
1mnc   ( 239 )    ny-afretsnYsLpqdDidgIqaiYg    
1hfc   ( 239 )    sy-tfsg--dVqLaqdDidgIqaiYgrs  
1mmpa  ( 239 )    tygng-dpqnfkLsqdDikGIqkLygk   
1bqoa  ( 222 )    lyhsltdltrfrLsqdDinGIqsLygpppd
456ca  ( 243 )    iy-tytgkshfmLpddDvqgIqsLYgpg  
1bqqm  ( 260 )    fy-qwmdtenfvLpddDrrgIqqLygge-s
                                aaaaaaaaaaa     


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