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Align your sequence(s)

ATPase family associated with various cellular activities (AAA)

class : alpha beta number of structures : 4 average size : 314 average PID : 28 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1g41 rasmol 2 A 444 A ATP-dependent hsl protease ATP-binding subunit hslu Haemophilus influenzae 2.30 26.4
1e94 rasmol 1 E 443 E ATP-dependent hsl protease ATP-binding subunit hslu Escherichia coli 2.8 25.43
1e32 rasmol 191 A 458 A transitional endoplasmic reticulum ATPase Mus musculus 2.9 22.4
1d2n rasmol 505 A 750 A vesicular-fusion protein NSF Cricetulus griseus 1.75 19.9
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : AAA  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1g41a  (   2 )     semtpreIvseLdqhIIgQadAKraVAiALr-nrwrrmqlqeplrhevt
1e94e  (   1 )    hsemtpreIvseLdkhIIgqdnAKrsVAiALr-nrwrrmqlneelrhevt
1e32a  ( 191 )    redeee-slnevgyddVGGcrkqlaqIkemVelPLrhpalfk--aigvkp
1d2na  ( 505 )         e-dyasyimngIikWgdpVtrVlddGellVqqTknsd-----rtp
                                       aaaaaaaaaaa aaaaaaa          

                           60        70        80        90        100 
1g41a  (  50 )    pkNILMigptGVGKTeIArrLAklAnA-PfikVeAtkFtv----gkevdS
1e94e  (  50 )    pkNILMigptGVGKTeIArrLAklAnA-PfikVeAtkFtevgyvgkeVdS
1e32a  ( 238 )    prGILLygppgTGKtlIArAVAnetgA-ffflInGpeIms-----klage
1d2na  ( 544 )    lVSVLLeGpphSGKtALAAkIAeeSnFpfikICspdkMig-----fseta
                     bbbb      aaaaaaaaaaa     bbbb 333            a

                           110       120       130       140       150 
1g41a  (  99 )    IIrdLTdsAmklvrqqeiaknr----------------------------
1e94e  (  99 )    IIrdLTdaAvkmvrvqaieknryrAeelAeerILdvlippaknnwgqteq
1e32a  ( 282 )    SesnLrkAFeeAek------------------------------------
1d2na  ( 589 )    KcqaMkkiFddAyk------------------------------------
                  aaaaaaaaaaaaaa                                    

                           160       170       180       190       200 
1g41a  ( 226 )    -----------------------------------------liddeaakl
1e94e  ( 149 )    qqepSaarqafrkkLregqlddkeiekqkarklkIkdAmklLieeeaakl
1e32a  ( 296 )    --------------------------------------------------
1d2na  ( 603 )    --------------------------------------------------
                                                                    

                           210       220       230       240       250 
1g41a  ( 235 )    inpeelkqkAidaVeqnGIVFIdeIdkICkkg--eysgaDvsregVQrdL
1e94e  ( 234 )    vnpeelkqdAidaVeqhGIVFIDeIDkICkrg--essgpdvsregVQrdL
1e32a  ( 296 )    --------------nApAIIFIdeLdaIAp--krekt-hgeverrIVsqL
1d2na  ( 603 )    --------------sqlSCVVVddIerLLdyvpigpr-fs---nlVLqaL
                                    bbbb  333               aaaaaaaa

                           260       270       280       290       300 
1g41a  ( 283 )    lpLVeGstVsTkhgmVkTdh-ILFIASgaFqvarpsdLip-eLqg--rLp
1e94e  ( 282 )    lpLVeGctvsTkhgmVkTdh-ILFIASgaFqiAkpsdLIp-eLqg--rLp
1e32a  ( 329 )    ltlMdglk-q--------rahVIVMAATn----rpnsIDp-aLrrfgrFd
1d2na  ( 635 )    lvlLkkaPpq--------grkLLIIGTTs----rkdvLqemeMln--aFs
                  aaaaa                 bbbbbb      333  a          

                           310       320       330       340       350 
1g41a  ( 329 )    irveLtaL-saadFeriLtephaslteqykalmategVnIaFttdA-vkk
1e94e  ( 328 )    irveLqaL-ttsdFerILtepnaSiTvqykalmategVnIeFtdsG-ikr
1e32a  ( 365 )    reVdIgip-datGRleILqi----hTk-----------nmkladdVdleq
1d2na  ( 671 )    ttIhVpnIatGeqLleALel----lg--------------nFkdke-rtt
                  bbbb      aaaaaaaaa     a                  aaa aaa

                           360       370       380       390       400 
1g41a  ( 377 )    IAeaAfrVNekTenigArRLhtVMerLMdkIsfsAsdmn-----------
1e94e  ( 376 )    IAeaAwqVNesTenigArrLhtVLerLMeeIsydAsdls-----------
1e32a  ( 399 )    VAneTh-------ghvGadLaalCseAalqAirkkmdlidledetidaev
1d2na  ( 702 )    Iaqqvkg---kkvwIGIkkLlmLIemSlqmd-----------------pe
                  aaaaa            aaaaaaaaaaaaaaaaa                

                           410       420       430 
1g41a  ( 416 )    -gqtvnIdaayVadalgeVvenedlSrfiL
1e94e  ( 415 )    -gqnitIdadyVskhLdalvadedlSrfiL
1e32a  ( 442 )    mns-laVtmdDFrwALsq            
1d2na  ( 732 )    y------rvrkFlallreegaspld     
                          aaaaaaaa              


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