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Align your sequence(s)

nitrogenase molybdenum-iron protein, alpha and beta chains

class : alpha beta number of structures : 6 average size : 489 average PID : 30 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
3min rasmol 5 A 480 A nitrogenase molybdenum-iron protein alpha chain Azotobacter vinelandii 2.03 20.6
1qh8 rasmol 1 A 478 A nitrogenase molybdenum-iron protein alpha chain Klebsiella pneumoniae 1.6 15.5
1mio rasmol 2 A 526 A nitrogenase molybdenum-iron protein alpha chain Clostridium pasteurianum 3.0 18
3min rasmol 33 B 523 B nitrogenase molybdenum-iron protein beta chain Azotobacter vinelandii 2.03 20.6
1qh8 rasmol 1 B 519 B nitrogenase molybdenum-iron protein beta chain Klebsiella pneumoniae 1.6 15.5
1mio rasmol 2 B 458 B nitrogenase molybdenum-iron protein beta chain Clostridium pasteurianum 3.0 18
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : oxidored_nitro  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
3mina  (   5 )                                      sreeVesLiqeVLevY
1qh8a  (   1 )                                   tnatGerNlalIqeVLevF
1mioa  (   2 )                                          senLkdeIleky
3minb  (  33 )                                  ekypqdkidevfqwtTtkey
1qh8b  (   1 )    sqtidkinscyplfeqdeyqelfrnkrqleeahdaqrvqevfawtTtaey
1miob  (   2 )                                              ldaTpkei
                                                          aaaaa     

                           60        70        80        90        100 
3mina  (  21 )    pekarkdRnkHLavn         cIiSnkksqpglmtIRgcAYaGSkgV
1qh8a  (  20 )    petarkeRrkHMMvSdpkmksVgkcIiSnrksqpgvmtVRgcAYaGSkgV
1mioa  (  14 )    ipktkktRsgHIvikteetpnp--eIvAntrtvpgiitaRgcAYaGCKgv
3minb  (  53 )    qelnfqre------------------------altvnpAkacQPLGAV-L
1qh8b  (  51 )    ealnfrre------------------------altvdpAkacQPLGAV-L
1miob  (  10 )    v----erk------------------------alrinpaktcQPVGAM-Y
                   aaa                                      aaaaa   

                           110       120       130       140       150 
3mina  (  71 )    VWgPIkdMIhISHGpvgCGqysragRrnyyigttg-vnAFVtmnftSdFq
1qh8a  (  70 )    VFgPIkdMAHISHGpvgCGqysragrrnyytgvsg-vdSFgtlnftSdFq
1mioa  (  62 )    VMgPIKDMVhITHGpigcSfytwggrrfkSkpengtglnfneyvfsTdMq
3minb  (  78 )    CAlGFekTMPYVHGsqgcvayFrsyFn--------rHFrepVsCvsDsMt
1qh8b  (  76 )    CSLGFanTLPYVHGsqgcvayFrtyFn--------rHFkepIaCvsDsMt
1miob  (  31 )    AAlGIhnCLPHSHGSqgCCsyHrtvLs--------rhFkepAmAsTSsFt
                         bbbbbb   aaaaa                       bb    

                           160       170       180       190       200 
3mina  ( 120 )    ekdivfgGdkkLaklIdevetlfplNkGISVQSEcpIgligDdIesvSkv
1qh8a  ( 119 )    erdivfgGdkkLsklIeeMellfplTkGITIQSEcpVgligddIsavAna
1mioa  ( 112 )    esdivfggvnkLkdaIheayemfh-PaAIGVYATcpVgligDdIlavAat
3minb  ( 120 )    edAavfgGqqnMkdgLqnCkatyk-PdMIAVSTTcmAevigDdLnafInn
1qh8b  ( 118 )    edAavfgGnnnMnlgLqnasalyk-PeIIAVSTTcmAevigDdLqafian
1miob  (  73 )    egAsvfgGgsnIktaVknIFslyn-PdIIAVHTTclSetlgddLptyisq
                    aaaa  aaaaaaaaaaaaaa     bbbbbb  aaaa    aaaaaaa

                           210       220       230       240       250 
3mina  ( 170 )    kgael----sktIVPVrCEGfrgvSQSlGHhiANdaVrdwVLgkrdedtt
1qh8a  ( 169 )    sskal----dkpVIPVrCEGfrgvSQSlGHhiANdvVrdwILnnregq-p
1mioa  ( 161 )    AskeI----gipVhAFsCEGykGvSqsAGHhiANntVMtdIIGkg----n
3minb  ( 169 )    SkkegfIpdefpVPfahTpsfvg-SHvtGWdnMFEgIAryFTlksmddkv
1qh8b  ( 167 )    AkkdgfVdssiaVPhahTpsfig-SHvtGWDnMFeGFAktfTady--qgq
1miob  ( 122 )    MedagsIpegklVIhTnTpSyvg-SHVtGFAnMVqGIVnyLSentga---
                  aaa                      aaaaaaaaaaaaaaa          

                           260       270       280       290       300 
3mina  ( 216 )    fastpyDVAIIGDYNIGgDAwsSriLLeeMgLrCvAQWSGd---------
1qh8a  ( 214 )    fettpyDVAIIGDYNIGgDAwaSriLLeeMgLrVvAQWSGd---------
1mioa  ( 203 )    keqkkySINVLGEyNIggDAwEMdrVLekIgYhVNAtLTGd---------
3minb  ( 218 )    vgsnkkINIVPGFeTyLgNFrVIkrMLseMgVgysLLSdPeevLdtpadg
1qh8b  ( 214 )    pgklpkLNLVTGFeTYLgNFrVLkrMMeqMaVpcSLLSdPSevLdtpadg
1miob  ( 168 )    --kngkINVIPGfv-gPadMreIkrLFeaMdIpyIMFPdTsgVLDgpttg
                        bbbb          aaaaaaaaa    bbb              

                           310       320       330       340       350 
3mina  ( 257 )    ---------GsIseIelTPkVkLNLVHCYRSMNyISrhMeekygIpwmeY
1qh8a  ( 255 )    ---------GtLveMenTpfVkLNLVHCYRSMNyIArhMeekhqIpwmeY
1mioa  ( 244 )    ---------AtYekVqnADkAdLNLVqcHRSINyIAeMMetkYgIPWIkC
3minb  ( 268 )    qfrmya-gGTtqeeMkdAPnAlnTVLLQpwhLekTkkFVegtWkHeVpkl
1qh8b  ( 264 )    hyrmys-gGTtqqeMkeAPDAiDTLlLQpwQLlkSkkVVqemWnQpAteV
1miob  ( 215 )    eykmypegGtkiedLkdTGNSdlTLSLgsyASdlGAktLekkckVpfktl
                             aaaaa      bbbb      aaaaaaaaa         

                           360       370       380       390       400 
3mina  ( 298 )    -nFFGPtkTiesLraIAakf-desIqkkCeeViakYkpeweavvakyrpr
1qh8a  ( 296 )    -nFFGptkIaesLrkIAdqf-ddtIranAeaViaryegqmaaiiakyrpr
1mioa  ( 285 )    -nFIGvdgIveTLrdMAkCfddpeLtkrTeevIaeEiaaiqddldyFkek
3minb  ( 317 )    nIPMGldWTdeFLmkVseisgq-----pipasLtkergrLvdmmtdshtw
1qh8b  ( 313 )    aIPLGlaATdeLLmtVsqlSgk-----piadaLtlergrLvdmmldshtw
1miob  ( 265 )    rTPIGvsATdeFImaLseatgk-----evpasIeeergqLidlmidaqqy
                       aaaaaaaaaaaa             aaaaaaaaaaaaaaaaaaaa

                           410       420       430       440       450 
3mina  ( 346 )    LegkrVMLYIGGLRPRhVIgAYedLgMeVvGTGYEFAhndDYdrTmkeMg
1qh8a  ( 344 )    LegrkVLLYMGGLRPRhVIgAYedLgMeIiAAGYEFAhndDYdrTLpdLk
1mioa  ( 334 )    LqgktACLYVgGsrShtYMnMLksFgVdslVAGFEfAhrDDYEGrevipt
3minb  ( 362 )    LhgkrFALWgdPDfVMGLVkFLLeLgCePVHILChnGnkrWkkaVdaiLa
1qh8b  ( 358 )    LhgkkFGLYgdpDfVmGLTrFLleLgCePtVILShnAnkrWqkaMnkmLd
1miob  ( 310 )    LqgkkVALLgdPdeIIALSkFIieLgAiPkYVVTGTpgmkFqkeIdaMLa
                  a   bbbbb    aaaa aaaaa    bbbbbbb    aaaaaaa     

                           460       470       480       490       500 
3mina  ( 396 )    --------------------------------------------------
1qh8a  ( 394 )    --------------------------------------------------
1mioa  ( 384 )    ikidadSknipeitvtpdeqkyrvvipedkveelkkagVpLsaygGMMke
3minb  ( 412 )    aspyGk--------------------------------------------
1qh8b  ( 408 )    aspyGr--------------------------------------------
1miob  ( 360 )    eag-ie--------------------------------------------
                                                                    

                           510       520       530       540       550 
3mina  ( 396 )    --dstLLYDDVTgyEFeeFVkrikPdLIGSGikEkfiFqk-------mgi
1qh8a  ( 394 )    --eGTLLFDDASsyELeaFVkalkPdLIGSGikEkyiFqk-------mgv
1mioa  ( 434 )    MhdgTILIDDMNhhDMevVleklkPdMFFAgikekfvIqk-------ggv
3minb  ( 418 )    ---nAtVyigkDLwHLRSLVFtdkPdFMIGnsyGkfIqrdTlhkgkefEV
1qh8b  ( 414 )    ---dSeVfincDLwhFRSLMFtrqPdFMIGnsyGkfIqrdTlakgkafeV
1miob  ( 365 )    ---gSkvkveGDFfdVHQwIknegVdLLISnTyGkfIaree-------nI
                       bbbb   aaaaaaaaaa    bbbb   aaaaaaa          

                           560       570       580       590       600 
3mina  ( 437 )    pFREMHsWdy------sGpYHGFdGFaiFArDMdmtLnnpcwkklqapwe
1qh8a  ( 435 )    pFRQMHsWdy------sGpYHGYdGFaiFArDMdmtLnnpawneltapwl
1mioa  ( 477 )    LSkQLhsYdy------nGpYAGFrGVvnFGheLVngiytpawkmitppwk
3minb  ( 465 )    pLIrIgfPIfdrhhlHrsTTLGYeGAmqILttLvnsIlerldeetrgmqa
1qh8b  ( 461 )    pLIrLgfPLfdrhhlHrqtTWGYeGAmnIVttLvnaVlekldsdtsqlgk
1miob  ( 405 )    pFvrFgfpImdryghyynpkVGYkGAirlVeeItnvIldkierect----
                   bbb                   aaaaaaaaaaaaaa             

                           
3mina                      
1qh8a                      
1mioa  ( 521 )    kasses   
3minb  ( 515 )    tdynhdlvr
1qh8b  ( 511 )    tdysfdlvr
1miob  ( 451 )    -eedfevvr
                           


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