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Align your sequence(s)

HMG (high mobility group) box

class : all alpha number of structures : 5 average size : 76 average PID : 25 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1hrz rasmol 3 A 75 A sex-determining region y protein (testis-determining factor) Homo sapiens N/A N/A
1nhn rasmol 3 - 81 - high mobility group protein hmg1 (hmg-1) (fragment) Cricetulus griseus N/A N/A
1ckt rasmol 7 A 77 A high mobility group protein hmg1 (hmg-1) Rattus norvegicus 2.50 23.8
1hma rasmol 2 - 74 - high mobility group protein d (hmg-d) Drosophila melanogaster N/A N/A
2lef rasmol 1 A 86 A lymphoid enhancer binding factor 1 Mus musculus N/A N/A
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : HMG_box  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1hrza  (   3 )     drvkrpmnafivwsrdqrrkmalenprmr--nseiskqlgyqwkmltea
1nhn   (   3 )     napkrppsAfflFcseyrpkikgehpgls--igdVakkLgemwnntaad
1ckta  (   7 )      kprgkmssyafFvqtcreehkkkhpdasvnfsefskkCserwktmsak
1hma   (   2 )    sdkpkrplsaymlwLnsaresIkrenp--gikvtevakrGgelwramk--
2lefa  (   1 )     mhikkplnafmlYmkemranvvaest--lkesaaInqiLgrrwhalsre
                           aaaaaaaaaaaaaaaa         aaaaaaaaaa      

                           60        70        80        
1hrza  (  50 )    ekwpffqeaqklqamhrekypnykyr             
1nhn   (  50 )    dkqpyekkAaklkekyekdiaayrakg-------kpdaa
1ckta  (  55 )    ekgkFedmakadkaryeremkty                
1hma   (  48 )    dkseweakaakakddydravkefeang            
2lefa  (  48 )    eqakYyelarkerqlhmqlypgwsardnygkkkkrkrek
                    aaaaaaaaaaaaaaaaa                    


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