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Align your sequence(s)

TNF(Tumor Necrosis Factor) family

class : all beta number of structures : 5 average size : 149 average PID : 32 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
4tsv rasmol 10 A 156 A tumor necrosis factor (TNF-alpha) Homo sapiens 1.8 20
2tnf rasmol 9 A 157 A tumor necrosis factor (TNF-alpha) Mus musculus 1.40 20.1
1d4v rasmol 119 B 281 B TNF-related apoptosis inducing ligand Homo sapiens 2.2 22.1
1tnr rasmol 28 A 171 A tumor necrosis factor (TNF-beta) Homo sapiens 2.85 16
1aly rasmol 116 - 261 - cd40 ligand Homo sapiens 2.0 22.3
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : TNF  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
4tsva  (  10 )        dkpvAhVvAnpqaeg----------------qLqWsn-rranAlla
2tnfa  (   9 )    s---dkpvAhVvAnhqvee----------------qLeWls-qranAlla
1d4vb  ( 119 )    p---qrVaAhITGtrgrsntlsspnsknekAlgrKiNSWessrsghSfls
1tnra  (  28 )         kPaAhLIGdpskqn----------------sLlWra-ntdrAflq
1aly   ( 116 )    gdqnpqIaAhViSeass--------------kttsvLqWae--kgyytms
                         bbbbbb                         bb       bbb

                           60        70        80        90        100 
4tsva  (  39 )    n-gVelr-dnqLvVpieglFlIySqVlFkgqGç----psthvlLtHtISr
2tnfa  (  39 )    n-gMdlk-dnqLvVpadglYlVySqVlFkgqgç----p-dyvlLtHtVsr
1d4vb  ( 166 )    n--LhLr-nGELVIhekgfYyIySqTyFrFqeeikentkndkqMvQyIYk
1tnra  (  56 )    d-gFsls-nnsLlVptsgiYfVySqVvFsgkayspkatssplyLaHeVql
1aly   ( 150 )    nnlVtLenGkqLtVkrqglYyIyAqVTFçSnre----assqapFiASLcL
                      bbb   bbb    bbbbbbbbbbbbb             bbbbbbb

                           110       120       130       140       150 
4tsva  (  83 )    iavsyqtkvnllsaiksPçqretpegaeakpwyepIylggvfqLekgDrL
2tnfa  (  83 )    faisyqekvnllsavksPÇpkdtpegaelkpwyepIylggvfqLekgDqL
1d4vb  ( 213 )    yts-ypdPilLmksarnScwsk-----daeyglysIyqGgifeLkenDrI
1tnra  ( 104 )    fssqypfhvpllssqkmvyPgl------qepwlhsmyhGaafqLtqgDqL
1aly   ( 196 )    kSpgr-ferillraantHssak-------pçgqqsIhLGgvfeLqpgASV
                  b       bbbbbbbb               bbbbbbbbbbbbb    bb

                           160       170    
4tsva  ( 133 )    sAeInrpdyLdfaesgqVyFGIia  
2tnfa  ( 133 )    SAeVnlpkyLdFaesgqVyFGVial 
1d4vb  ( 257 )    FVSVtnehlIdM-dheaSfFGAflvg
1tnra  ( 148 )    sThTdgiphLvl-spstVfFGAfal 
1aly   ( 238 )    fVnVtdpsqVsh-gtgfTsFGLlkl 
                  bbbb  333         bbbbbb  


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