Lyase
|
class : all alpha |
number of structures : 5 |
average size : 444 |
average PID : 31
% |
PDB
code |
start
residue |
start
chain |
end
residue |
end
chain |
name |
source |
resolution |
R-factor |
1jsw
 |
1 |
A |
459 |
A |
aspartate ammonia-lyase |
Escherichia coli |
2.8 |
21.6 |
1fur
 |
4 |
A |
459 |
A |
fumarate hydratase class II |
Escherichia coli |
1.95 |
17 |
1dcn
 |
33 |
A |
465 |
A |
delta crystallin II (argininosuccinate lyase) |
Anas platyrhynchos |
2.30 |
22.9 |
1aos
 |
20 |
A |
462 |
A |
argininosuccinate lyase |
Homo sapiens |
4.2 |
18.79 |
1yfm
 |
27 |
- |
485 |
- |
fumarate hydratase, mitochondrial |
Saccharomyces cerevisiae |
2.6 |
19.6 |
|
pir |
ali |
malform |
joy-html |
colour postscript |
postscript |
superimposed coordinates
(RasMol)
|
10 20 30 40 50
1jswa ( 1 ) msnniriEedllgtreVpadAyyGvhTlrAienfyis--nnkisdipeFV
1fura ( 4 ) vrsEkdsmgaidVpadkLWGAqTqrSlehfris--tekM-pts-Li
1dcna ( 33 ) dqr-lS
1aosa ( 20 ) imekfnaSia-----------------yDrh-Lw
1yfm ( 27 ) sfrtetdafgeihVpadkyWGAqTqrsfqnfkiggarerM-plp-LV
aa
60 70 80 90 100
1jswa ( 49 ) rGMVmVKkAAAmANkelqtIpksvAnaIiaACdeVlnnGkcmdqFpVDvy
1fura ( 46 ) hALAlTKrAAAkVNedlglLseekAsAIrqAAdeVl-agqhddEFpLAIw
1dcna ( 38 ) evDIqgsmAYAkALekagiLtktelakIlsgLekIseewskgvfvvk---
1aosa ( 36 ) evDvqgskAySrGLekaglLtkaeMdqIlhGLdkvk---------ln---
1yfm ( 72 ) hAFGvLKkSAAiVNeslggLdpkiSkaIqqAAdeVa-sgklddhFpLvVf
aaaaaaaaaaaaaaaa aaaaaaaaaaaaaa
110 120 130 140 150
1jswa ( 99 ) QggaGtSVNmNTNeVLANIGLelmghqkgeyqyLnpndhVnkcQstnDAY
1fura ( 95 ) QtgsGtqSNMNMNEVLANrASellggvrGmeRkVhPnddVnksQssnDVF
1dcna ( 85 ) --gsdedihtanerrLkelig-------------diAgkLntgRsrNDqv
1aosa ( 83 ) --snDediHtanerrLkelIg-------------atAgkLhtgrsrnDqv
1yfm ( 121 ) QtgsGtqSNmNANEVISnrAiei----------vhpnnhCnqsQssnDTF
aaaaaaaaaaaa aaaaa
160 170 180 190 200
1jswa ( 149 ) PTGFRIAVysSLi-kLvdAInqLreGFerKavefqdilKMgr-tqlqdav
1fura ( 145 ) PTAMhVAALlALrkqLipqLktLtqTLneksraFadivKIgrt-nlqdat
1dcna ( 120 ) VTDLKlfMknsLs-iIsthLlqLIktLVerAaieidviLPgyt-nlqkaq
1aosa ( 118 ) VTDLRLwMrqtCs-tLSglLweLIrtMVdrAeaerdvlFPgyt-hlqraq
1yfm ( 170 ) PTVMhIAASlqIqneLipeLtnLknaLeakskeFdhivKIgrt-hlqdat
aaaaaaaaaaaaa aaaaaaaaaaaaaaaaaa bbbbb bbb
210 220 230 240 250
1jswa ( 197 ) pmtLGqeFraFSilLkeEVknIqrtAelLLeVnLGaTaigtGlntpkeYs
1fura ( 194 ) PltLGqeIsgWVamLehnlkhIeyslphVaeLALGGtavGtglnthpeYa
1dcna ( 168 ) PiRWSqfLLsHAvaLTrDSerLgeVkkrInvLPLGSGalagNpl--dIdr
1aosa ( 166 ) PiRWShwILshAvaLtrDSerLleVrkrInvLPLGSgaiagNpl--gVdr
1yfm ( 219 ) PltLGqeFsgYvqqVenGiqrVahSlktLsfLAQGGtavGtglnTkpgFd
bbbaaaaaaaaaaaaaaaaaaaaaaaaaa bb a
260 270 280 290 300
1jswa ( 247 ) plAVkkLaeVTgfpCvpaedlieaTsdcgaYvmVHgALkrLAvkMskICn
1fura ( 244 ) rrVAdeLavitcApFvtApnkfeaLatCdALvqAHgaLkgLAasLmkIAn
1dcna ( 216 ) emLrseL----eFa-sislnsmdAIseRdFVveFLsFAtlLMihLskMAe
1aosa ( 214 ) elLraeL----nFg-aitlnsmdATseRdFVaeFLfWrslCMthLsrMAe
1yfm ( 269 ) vkIAeqIskeTglkFqtApnrfeaLaaHdaIveCSgaLntLAcsLfkIAq
aaaaaaa bb aaaaaa aaaaaaaaaaaaaaaaaaaaaa
310 320 330 340 350
1jswa ( 297 ) dLrlLssgpraglnEInLpe-lqagssimpakvnpvvPevVnqvCfkVig
1fura ( 294 ) dVrwlAsGprcgigEIsIpe-nepgssimpgkvnptqCeaLtmlCcqVmg
1dcna ( 261 ) dLiiYsts---efgFLtLsdafst---------npdSLelIrsksgrVfg
1aosa ( 259 ) dLilYCtk---efsFVqLsdayStgsslmpqkknpdsLelIrskagrVfg
1yfm ( 319 ) dIrylGsGprcgyhELmLpe-nepgssimpgkvnptqNeaLtqvCvqVmg
aaaaa bb aaaaaaaaaaaaaaa
360 370 380 390 400
1jswa ( 346 ) ndttVtmAaeagqlqlNvmEPvIgqAMFeSVhiLtnACynLLekCIngIt
1fura ( 343 ) NdvaInmGGasgnfelNvfRPmVIhnFLqSVrlLAdgMesFnkhCAvgIe
1dcna ( 308 ) rlasIlmvlkglpsTynkdLqeDkeAVfdVvdtLtavLqvAtg-VIstLq
1aosa ( 306 ) rcagLlmtlkglpsTynkdLqeDKeAVfeVSdtMsaVLqvAtg-VIstLq
1yfm ( 368 ) nnaaItfaGsqgqfelNvfKPvMIanLLnSIrlItdaAysFrvhCVegIk
aaaaaaaaaa aaaaaaaaaaaaaaaaaaaaa b
410 420 430 440 450
1jswa ( 396 ) AnkevCegyVynsigivtyLnpfIg---------hhnGdiVgkiCaetgk
1fura ( 393 ) PnrerInqlLneslmlvtaLnthig---------ydkAaeIakkAhkegl
1dcna ( 357 ) IskenMekaLt-peMLatdLAlyLvrkgvpfrqAhtaSgkAvhlAetkgi
1aosa ( 355 ) IhqenMgqALs-pdMLatDLAyyLvrkgmpfrqAheAsgkAvfmaetkgv
1yfm ( 418 ) AneprIhelltkslmlvtaLnpkig---------ydaaskVaknAhkkgi
b aaaaaa a aaaaaaaaaaaa
460 470 480 490 500
1jswa ( 437 ) sVreVVler-----gllteaeLddifsv
1fura ( 434 ) tLkaAAlal-----gylseaeFdswvrpeqm
1dcna ( 406 ) tInnLsledLksIspqFs-sdVsqvfnfvnSVeqytalggtAksSVttqi
1aosa ( 404 ) alnqLslqeLqtisplFs-gdVicVwdyrhSVeqygalggtArsSVdwqI
1yfm ( 459 ) tLkeSAlel-----gvltekefdewvvpehml
aa
510
1jswa
1fura
1dcna ( 455 ) eqlrelmkkqk
1aosa ( 453 ) rqVrallqaq
1yfm