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Align your sequence(s)

Ribulose bisphosphate carboxylase large chain, catalytic domain

class : alpha beta barrel number of structures : 7 average size : 320 average PID : 50 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1gk8 rasmol 148 A 475 A Ribulose-1,5 bisphosphate carboxylase/oxygenase Chlamydomonas reinhardtii 1.4 14.9
8ruc rasmol 148 A 475 A ribulose-1,5-bisphosphate carboxylase/oxygenase Spinacia oleracea 1.6 21.1
1rbl rasmol 148 A 475 A ribulose 1,5 bisphosphate carboxylase/oxygenase Synechococcus, Strain Pcc 6301 2.2 20.0
1bxn rasmol 151 A 467 A ribulose bisphosphate carboxylase large chain Alcaligenes eutrophus 2.7 26.6
1bwv rasmol 148 A 478 A ribulose bisphosphate carboxylase Galdieria partita 2.40 16.3
1geh rasmol 136 A 443 A Ribulose-1,5-bisphosphate carboxylase/oxygenase Thermococcus kodakaraensis 2.80 22.4
5rub rasmol 136 A 457 A ribulose-1,5-bisphosphate carboxylase/oxygenase Rhodospirillum rubrum 1.7 N/A
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : RuBisCO_large  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1gk8a  ( 148 )    fvG-PhGiqvErdkLnky---grGLLGCTIkpklglsaknYGraVyeCLr
8ruca  ( 148 )    fqGPPhGiqvErdkLnky---grPLLGCtIkpklglsaknYGraVyeCLr
1rbla  ( 148 )    fqGPPhGiqvErdlLnKy---grPMLGCtIkpklglsaknYGraVyeCLr
1bxna  ( 151 )    faGPSTGIivErerLdKf---grPLLGAtTkpklglsGrnYGrvVyeGLk
1bwva  ( 148 )    fqGPATGVilERerLdkf---grPLLGCTTkpklglsGknYGrvVyeALk
1geha  ( 136 )    fdGPafGiegVrkmLeIk---drPIYGVVPkpkvgysPeeFeklAydLLs
5ruba  ( 136 )    fdGPsvnIsaLWkvLgrpevdGgLVVGtiIkpklglrpkpFAeaChafWl
                         aaaaaaaa         bbb          aaaaaaaaaaaaa

                           60        70        80        90        100 
1gk8a  ( 195 )    ggLDFT-DDenVnsqpfMrwrdRFlfVaeAIykAqaetgevKGHYLNAtA
8ruca  ( 195 )    ggLDFT-DDenVnsqpfMrwrdRFlfCaeaLykAqaetgeiKGHYLNAtA
1rbla  ( 195 )    ggLDFTKDDenInsqpfQrwrdRFlfVAdaIhkSqaetgeiKGHYLNVtA
1bxna  ( 198 )    ggLDFMKDDenInsqpfmhwrdRFlfVmdaVnkAsaatgevKGSYLNVtA
1bwva  ( 195 )    ggLDFV-DDenInsqpfMrwreRYlfTMeavnkAsaatgevKGHYLNVta
1geha  ( 183 )    ngADYMKDDenLtspwyNrFeeRAeiMakiIdkVenetgekKTWFANIta
5ruba  ( 186 )    G-GDFIKnDepqgnqpfaplrdtIalVAdAMrrAqdetgeaKLFSAnIta
                      bb             aaaaaaaaaaaaaaaaaaa    bb bb   

                           110       120       130       140       150 
1gk8a  ( 245 )    gtceeMmkrAv-Akel-----gVpIIMHDYltggftaNtsLAiyCrdngL
8ruca  ( 245 )    gtcedMmkrAvfArel-----gVpIVMHDYLtggftaNttLShyCrdngL
1rbla  ( 245 )    ptceeMmkRAefAkel-----gMpIIMHDFltagftaNttLAkwCrdngV
1bxna  ( 248 )    gtmeeMyrrAefAksl-----gSvIIMVdl-ivgwtcIqsMSnwCrqndM
1bwva  ( 245 )    atmeeMyarAnfAkel-----gSvIIMIDl-vigytaIqtMAkwArdndM
1geha  ( 233 )    -dlleMeqrLevLadl-----gLkHAMVDVvitgwgaLryIrdlAadygL
5ruba  ( 235 )    ddpfeIiarGeyVletFgeNashVALLVdGyvagaaAIttArrrfp--dn
                    aaaaaaaaaaaaa         bbbbb     aaaaaaaaaaaaa   

                           160       170       180       190       200 
1gk8a  ( 290 )    LLHIhramhavidrqr-nhgihFrvLAkaLRmsGGDHLhSgTvvGklege
8ruca  ( 290 )    LLHIhramhavidrqk-nhgmhFrvLAkaLRlsGGDHIhSgTvvGklege
1rbla  ( 290 )    LLHIhramhavidrqr-nhgihFrvLAkcLRlSGGDHLhSgTvvGklegd
1bxna  ( 292 )    ILHLhraghgtyTrqk-nhgvsFrvIAkwLRlaGVDHMHTGTAvgklegd
1bwva  ( 290 )    ILHLhragNstysrqk-nhgmnFrvICkwMRmAGVDHIhAgTvvGklegd
1geha  ( 277 )    AIHGhramhaafTrnp-yhgismfvLAklYRliGIDQLhVgtaeg----g
5ruba  ( 283 )    FLHYhraghgavTspqskrgytafvHCkmARlqGASGIhTgts-------
                  bbbbb    aaaa         aaaaaaaaaaa   bbb           

                           210       220       230       240       250 
1gk8a  ( 339 )    reVTlGFVdLMrddyvekdrsrGIyftqdW-smpGVMPVAsggIHVwhMP
8ruca  ( 339 )    rdiTlGFVdLLrddytekdrsrgIyftqsWvstpGVLPVAsggIHVwhMP
1rbla  ( 339 )    kaSTlGFVdLMredhIeadrsrGVfftqdWasmpGVLPVAsggIHVwhMp
1bxna  ( 341 )    pltVqGyYnVCrdayTqtdltrgLffdqdWaslrkVMPVAsggIhAgQMh
1bwva  ( 339 )    piITrGfykTLllpkLernlqEgLffdmeWaslrkVMPVAsggIhAgqMh
1geha  ( 327 )    kwdviQnArILreshYkpdenDvfhleqkFysikaAFPTSsggLhPGnIq
5ruba  ( 335 )    --sdraiAyMLtqdeaqGp-----fyrqsWggmkaCTPIIsggmnALrMp
                  aaaaaaaaaaaa  bb           bb       bbbbb       aa

                           260       270       280       290       300 
1gk8a  ( 389 )    aLVeIFg-ddACLQFGgGTlgHpwgnapGAaANrvALeaCtqArnegrdL
8ruca  ( 389 )    aLTeIFg-ddSVLQFggGTlgHpwgnapGAvANrvALeaCvqArnegrdL
1rbla  ( 389 )    aLVeiFg-ddSVLQFggGTlgHpwgnapGAtANrvALeaCvqArnegrdL
1bxna  ( 391 )    qLIhlFg-ddVVLQFggGTigHpqgiqaGAtANrvALeaMvlArnegrdi
1bwva  ( 389 )    qLIhyLg-edVVLQFGgGTigHpdgiqaGAtANrvALeaMilArnenrdy
1geha  ( 377 )    pVIeaLg-tdIVLqLggGTlgHpdgpaAGArAVrqAIdAimq--------
5ruba  ( 378 )    gfFenLgnAnVIlTAgggaFgHidgpvaGArSLrqAWqAwrd--------
                  aaaaaa     bbb  aaaa     aaaaaaaaaaaaaaaaaaaa    a

                           310       320       330       340 
1gk8a  ( 438 )    areggdVIrsaçkwSpeLaaAçevwkeikfe-fdtidkl   
8ruca  ( 438 )    aregntIIreAtkwSpeLaaAcevwkeikfe-fpAmdtv   
1rbla  ( 438 )    yreggdILreAGkwSpeLaaAldlwkeikfe-fetmdkl   
1bxna  ( 440 )    lneGpeILrdAarwcgpLraAldtwgdi              
1bwva  ( 438 )    lteGpeILreaAktcgaLrtAldlwkditfn-ytstdtSdfv
1geha  ( 418 )    ----gipLdeyakthkeLarAlekwGhvtp            
5ruba  ( 420 )    ----gvpvldyArehkeLarAFeSfpgdAdqiypgWrkalgv
                  aaaaaaaaaaaaa  aaaaaaaaa                  


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