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Align your sequence(s)

Cyclodextrin glycosyltransferase

class : multi domain number of structures : 6 average size : 684 average PID : 63 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1pam rasmol 1 A 686 A Cyclodextrin glucanotransferase Bacillus Sp. Strain 1011 1.8 16.1
1d3c rasmol 1 A 686 A Cyclodextrin glycosyltransferase Bacillus circulans 1.78 22.0
1cgt rasmol 1 - 684 - Cyclodextrin glycosyltransferase Bacillus circulans, strain 8 2.0 16.6
1ciu rasmol 1 - 683 - Cyclodextrin glycosyltransferase Thermoanaerobacterium thermosulfurigenes EM1 2.3 N/A
1cyg rasmol 1 - 680 - Cyclodextrin glucanotransferase Bacillus stearothermophilus 2.5 15.4
1qhp rasmol 1 A 686 A Alpha amylase Bacillus stearothermophilus 1.70 15.3
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : CBM_20  TIG  alpha-amylase_C  alpha-amylase  
CAZy : GH_13  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1pama  (   1 )    apDtsvsNkqNFSTDVIYQIFTDRFsdgnpannpt---gaafdgsÇtnlr
1d3ca  (   1 )    apDtsvsNkqNFSTDVIYQIFTDRFsdgnpannpt---gaafdgtÇtnlr
1cgt   (   1 )    dpDtavtNkqSFSTDVIYQVFTDRFldgnpsnnPt---gaaydatÇsnlk
1ciu   (   1 )    asDtavsnvvNYSTDVIYQIvTDRFvdgntsnnPt---gdlydpthtslk
1cyg   (   1 )       agnlnkvnFTsDVVYQIvVDRFvdgntsnnPs---galfsstnlr
1qhpa  (   1 )          ssSAsVKgdVIYQIIIDRFydGdttnnnpakSygLyDptkskwk
                                  bbb  333     333      333         

                           60        70        80        90        100 
1pama  (  48 )    lyÇGGDWqGIinkIndgYLtgMgItAIWISQPVeNIysvInysg-vnnTA
1d3ca  (  48 )    lyÇGGDWqGIinkIndgYLtgMgVtAIWIsQPVeNIysiInysg-vnNTA
1cgt   (  48 )    lYÇgGDWqGLInkIndnYFsdLgVtALWISQPVeNIfatInysg-vtnTA
1ciu   (  48 )    kYFgGDWqGIinkIndgYLtgMgVtAIWIsQPVeNIyavlpdstfggsTS
1cyg   (  45 )    kYÇgGDWqGIInkIndgYLtdMgVtAIWIsQPVeNVfsvmnda--sgsAS
1qhpa  (  45 )    mYWgGDLeGVrqkLp--YLkqLgVtTIWLSPVLDNLdtlAg----tdnTG
                        aaaaaaaaa          bbbb   bbb               

                           110       120       130       140       150 
1pama  (  97 )    YhGywArDFkktNpaYGtmqdFknLIdtAhahnIKVIIDFAPNHTSPAss
1d3ca  (  97 )    YHGYWArDFkkTNpaYGtiadFqnLiaaAhaknIKVIIDFAPNHTSPAss
1cgt   (  97 )    YhGywArDFkkTNpyFGtmadFqnLittAhakgIKIVIDFAPNHTSPAme
1ciu   (  98 )    YhGywArDFkrtNpyFGsftdFqnLIntAhahnIKVIIDFAPNHTSPAse
1cyg   (  93 )    YhGywArDFkkpNpfFGtlsdFqrLVdaAhakgIKVIIDFAPNHTSPAse
1qhpa  (  89 )    YHGYWTrDFkqIEeHFgnwttFdtLVndAhqngIkVIVDFVPNHSTPFka
                       bbbbbbb      aaaaaaaaaaaaa   bbbbbb   bbbb   

                           160       170       180       190       200 
1pama  ( 147 )    ddpsfAeNGrLydngnllggytnDt-qnLFhhyggTd-fstiEnGIYknl
1d3ca  ( 147 )    dqpsfAeNGrLydngtllgGYtnDt-qnLFhhnggTd-fsttEngIYknL
1cgt   ( 147 )    tdtsfAeNGrLydngtlvggYtnDt-ngyFhhnggSd-fsslEngIYknl
1ciu   ( 148 )    tdptyAeNGrLydngtllgGYtnDt-ngyFhhyggTd-fssyEDgIYrnl
1cyg   ( 143 )    tnpsyMenGrLydngtllgGYtnDa-nmyFhhnggTt-fsslEDgIYrnl
1qhpa  ( 139 )    ndstfAeGGaLynngtymGnyfdDatkgyFhhngdIsnwddryeAQwkNF
                            bbb  bbbb                      aaaaaa   

                           210       220       230       240       250 
1pama  ( 195 )    y-----dlADLnHnnssVDvYLkdAIkmWLdlgVDGIRVdaVkhMpfgWQ
1d3ca  ( 195 )    y-----dLADLnHnnstVDvYLkdAIkmWLdlgIDGIRMNAVkHMPfgWQ
1cgt   ( 195 )    y-----dlADFnHnnatIDkYFkdAIklWLdmgVDGIRVdaVkhMplgWQ
1ciu   ( 196 )    f-----dlADLnQqnstIDsYLksAIkvWLdmgIDGIRLdaVkhMpfGWQ
1cyg   ( 191 )    f-----dlADLnHqnpvIDrYLKdAVkmWIdmgIDGIRMdaVkhMPfGWQ
1qhpa  ( 189 )    tDpagFsLADLsQengtIAqYLtdAAvqLVahgADGLRIDAVKHFNsgFS
                         bbb     aaaaaaaaaaaaaaa     bbbb  333  aaaa

                           260       270       280       290       300 
1pama  ( 240 )    kSFMAtINnykpVFTFGewfL-gvne-ispeYhqFAneSgMsLLDFrFAq
1d3ca  ( 240 )    kSFMAaVNNykpVfTFGQWfL-gvne-vspeNhkFAneSgMsLLDFrFAq
1cgt   ( 240 )    kSWMssIYahkpVfTFGeWfl-gsaa-sdadNtdFAnkSgMsLLDFRFNs
1ciu   ( 241 )    kNFMDsILsyrpVfTFGeWfL-gtne-idvnNtyFAneSgMsLLDFrFSq
1cyg   ( 236 )    kSLMDeIDnyrpVfTFGeWfL-sene-vdanNhyFAneSgMsLLDFrFGq
1qhpa  ( 239 )    kSLADkLYqkkDIFLVGEWygDdPgtanhleKVrYANnsgVnVLDFDLNt
                  aaaaaaaa     bbbb            aaaaaaaaa   bb  aaaaa

                           310       320       330       340       350 
1pama  ( 288 )    kArQVFrdntdnMygLkaMLegSevdYaqvndQVTFIDNHdmeRFhtsng
1d3ca  ( 288 )    kVrQVFrdntdnMygLkaMLegSaadYaqvddQVTFIDnHdmeRFhasna
1cgt   ( 288 )    AVrnVFrdntsnMyaLdsMInsTatdYnqvndQVTFIDNHdmdRFktsav
1ciu   ( 289 )    kVrqVFrdntdtMygLdsmIqsTasdYnfindMVTFIDnHdmdRFyngg-
1cyg   ( 284 )    kLRQVLrnnsdnWygFnqMIqdTasaYdevldQVTFIDNHdmdRFmidgg
1qhpa  ( 289 )    VIrnVFGtftqtMydLnnmvnqTgneYkykeNLITFIDnHdmsRFlsvns
                  aaaaaa      aaaaaaaaaaaaaa   333 bb               

                           360       370       380       390       400 
1pama  ( 338 )    drrkLEQALAFTLTSRGVPAIYYGSEQYmsggndpdNRarLpsfsttttA
1d3ca  ( 338 )    nrrkLEQALAFTLTSRGVPAIYYGTEQYmsggtdpdNRarIpsfststtA
1cgt   ( 338 )    nnrrLEQALAFTLTSRGVPAIYYGTEQyltgngdpdNrakMpsfsksttA
1ciu   ( 338 )    strpVEQALAFTLTSRGVPAIYYGTEQyMtgngdPyNRamMtsfntsttA
1cyg   ( 334 )    dprkVDMALAVLLTSRGVPNIYYGtEQymtgngdpnNRkmMssfnkntrA
1qhpa  ( 339 )    nkaNLhQALAFILTSRGTPSIYYGTEQymaggndpyNRgmMpafdttttA
                    aaaaaaaaaaaa   bbbbb  333        333          aa

                           410       420       430       440       450 
1pama  ( 388 )    YqVIqkLAplRksNPAIAYGstherwinndVIIYERkfgnNVAVVAINrn
1d3ca  ( 388 )    YqVIqkLApLRkcNPAIAYGstqerWinndVLIYERkfgsNVAVVAVNrn
1cgt   ( 388 )    FnVIskLAplRksNPAIAYGstqqrwinndVYVYERkfgkSVAVVAVNrn
1ciu   ( 388 )    YnVIkkLAplRksNPAIAYGttqqrwinndVYIYERkfgnNVALVAINrn
1cyg   ( 384 )    YqVIqkLSslRrnNpALAyGdteqrwingdVYVYERqfgkDVVLVAVNrs
1qhpa  ( 389 )    FkEVstLAgLRrnNaAIqYGtttqrwInndVYIYERkffnDVVLVAINRn
                  aaaaaaa  aaaa aaaaa bbbbbbb   bbbbbbbb  bbbbbbbb  

                           460       470       480       490       500 
1pama  ( 438 )    mntpasItgLvTsLprgsynDvLggiLnGntLtVgagGaAsnftLapGGT
1d3ca  ( 438 )    lnapasIsgLvTsLpqgsynDvLgglLnGntLsVgsggaAsnftLaaGGT
1cgt   ( 438 )    lstsasItgLsTsLptgsytDvLggvLnGnnItSt-ngsInnftLaagAT
1ciu   ( 438 )    lstsynItgLyTaLpagtytDvLgglLnGnsIsVasdgsVtpftLsaGEV
1cyg   ( 434 )    sssnysItgLfTaLpagtytDqLgglLdGntIqVgsngsVnafdLgpgeV
1qhpa  ( 439 )    tqssysIsgLqTaLpngsyaDyLsgllgGngIsVs-ngsVasftLapGAV
                      bbb         bbb            bbb        bbb    b

                           510       520       530       540       550 
1pama  ( 488 )    AVWqyttdAttPiIGNVgpmMAkpgvtITIDGrGFgsgkgtVyFgttaVt
1d3ca  ( 488 )    AVWqytaaTatPtIGHVgpmMAkpgvtITIDGrGFgsskgtVyFgttavs
1cgt   ( 487 )    AVWqyttaEttPtIGHVgpvMGkpgnvVTIDGrGFgstkgtVyFgttavt
1ciu   ( 488 )    AVWqyvsssnsPlIgHVgptMTkagqtITIDGrgFgttsgqVlFgstaGt
1cyg   ( 484 )    GVWAysatestPiIGHVGpmMGqvghqVtIdGeGFgtntgtVkFgttaAn
1qhpa  ( 488 )    SVWqystsAsaPqIGSVAPnMGipgnvVTIdGkgFgttqgtVtFggvtAt
                  bbbbb       bbbbbb  bb    bbbbbbb       bbbb  bb  

                           560       570       580       590       600 
1pama  ( 538 )    gadIvaWedtQIqVkIpavpGgiydIrVanaagaaSniydnFeVLtgdQV
1d3ca  ( 538 )    gadItsWedtqIkVkIpavaGgnynIkVanaagtaSnvydnFeVLsgdQV
1cgt   ( 537 )    gaaItsWedtQIkVtIpsvaAgnyaVkVaas-gvnSnaynnFtILtgdQV
1ciu   ( 538 )    ---ivsWddteVkVkVpsvtpgkynIsLktssgatSntynnInILtgnQI
1cyg   ( 534 )    ---vvsWsnnqIvVaVpnvspgkynItVqsssgqtSaaydnFeVLtndQV
1qhpa  ( 538 )    ---VksWtsnrIeVyVpnmaagltdVkVtag-gvsSnlys-YnILsgtQT
                     bbbb   bbbbb      bbbbbbbb         bbbbbb    bb

                           610       620       630       640       650 
1pama  ( 588 )    TVrFVInnA-tTalgqnVfLTGnvsELgnwdpn------nAiGpMynqvV
1d3ca  ( 588 )    SVrFVVnnA-tTalgqnVyLTGsvsELgnwdpa------kAiGpMyNqvv
1cgt   ( 586 )    TVrFVVnnA-sttlgqnLyLTGnVaELGnwstgs-----tAiGpAfnqvi
1ciu   ( 585 )    CVrFVVnnA-sTvygenVyLTGnvaELgnwdts------kAiGpMfnqVv
1cyg   ( 581 )    SVrFVVnnA-ttnlgqnIyIVGnvyeLgnwdts------kAiGpMfnqVv
1qhpa  ( 583 )    SVvFtVksAppTnlgDkIyLTGnipELGnwstdTsgaVnNAqGpLlap--
                  bbbbbbb         bbbbbb  333                       

                           660       670       680       690       700 
1pama  ( 631 )    yqyptWYyDVSVPagqtIeFkFLkkqgs-tvtwEgganrtftTptsgTat
1d3ca  ( 631 )    yqypnWYyDVSVPagktIeFKFLkkqgs-tvtwEggsnhtftApssgTat
1cgt   ( 630 )    hqyptWYyDVSVPagkqLeFkFFkkngs-titwEsgsnhtftTpasgTat
1ciu   ( 628 )    yqyptWYyDVSVPagttIqFkFIkkngn-titwEggsnhtytVpsssTgt
1cyg   ( 624 )    ysyptWYiDVSVPegktIeFkFIkkdsqgnvtwEsgsnhvytTptntTgk
1qhpa  ( 631 )    -nypdwfyVFSVPagktIqFKFFIkradgtiqwEngsnhvatTptgaTgn
                       bbbbbbbb   bbbbbbbbb     bbb     bbbb      bb

                         
1pama  ( 680 )    vnvnwqp
1d3ca  ( 680 )    invnwqp
1cgt   ( 679 )    vtvnwq 
1ciu   ( 677 )    vivnWqq
1cyg   ( 674 )    iivdWqn
1qhpa  ( 680 )    itvtWqn
                  bbbb   


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