|
|
| class : alpha plus beta | number of structures : 20 | average size : 87 | average PID : 23 % |
| PDB code |
start residue |
start chain |
end residue |
end chain |
name | source | resolution | R-factor |
|---|---|---|---|---|---|---|---|---|
1jmt
![]() |
43 | A | 146 | A | splicing factor U2AF 35 kDa subunit | Homo sapiens | 2.20 | 22.60 |
1qm9
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111 | A | 198 | A | polypyrimidine tract-binding protein, RNA binding fragment | Homo sapiens | N/A | N/A |
1a9n
![]() |
6 | B | 99 | B | U2 B, N-terminal domain, residues 4-99 | Homo sapiens | 2.38 | 28.20 |
1nu4
![]() |
7 | A | 97 | A | U1A RNA binding domain | Homo sapiens | 1.80 | 20.30 |
2u1a
![]() |
1 | - | 88 | - | U1 small nuclear ribonucleoprotein A RNA binding domain 2, RBD2 | Homo sapiens | N/A | N/A |
1qm9
![]() |
1 | A | 110 | A | polypyrimidine tract-binding protein, RNA binding fragment | Homo sapiens | N/A | N/A |
1hd1
![]() |
98 | A | 172 | A | heterogeneous nuclear ribonucleoprotein D0 RNA-binding domain | Homo sapiens | N/A | N/A |
1l3k
![]() |
8 | A | 91 | A | heterogeneous nuclear ribonucleoprotein A1 RNA-recognition motif domain | Homo sapiens | 1.10 | 15.60 |
2mst
![]() |
110 | A | 184 | A | musashi1 RNA-binding domain | Mus musculus | N/A | N/A |
1iqt
![]() |
183 | A | 257 | A | heterogeneous nuclear ribonucleoprotein D0, C-terminal domain | Homo sapiens | N/A | N/A |
2u2f
![]() |
1 | A | 85 | A | splicing factor U2AF 65 kD subunit, second RNA-binding domain | Homo sapiens | N/A | N/A |
1oo0
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64 | B | 155 | B | CG8781-PA middle fragment | Drosophila melanogaster | 1.85 | 21.50 |
1cvj
![]() |
11 | A | 90 | A | polydenylate binding protein 1 residues 1-190 | Homo sapiens | 2.60 | 23.00 |
1h6k
![]() |
38 | X | 118 | X | 20 kDa nuclear cap binding protein RNP domain | Homo sapiens | 2.00 | 20.32 |
1fxl
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37 | A | 118 | A | paraneoplastic encephalomyelitis antigen HUD, N-terminal two RRM-domains | Homo sapiens | 1.80 | 19.20 |
1fxl
![]() |
119 | A | 203 | A | paraneoplastic encephalomyelitis antigen HUD, N-terminal two RRM-domains | Homo sapiens | 1.80 | 19.20 |
1cvj
![]() |
91 | A | 179 | A | polydenylate binding protein 1 | Homo sapiens | 2.60 | 23.00 |
1fje
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92 | B | 175 | B | nucleolin RBD12, two N-terminal RBD domains | Mesocricetus auratus | N/A | N/A |
1fje
![]() |
1 | B | 91 | B | nucleolin RBD12, two N-terminal RBD domains | Mesocricetus auratus | N/A | N/A |
1u2f
![]() |
1 | A | 90 | A | splicing factor U2AF 65kD subunit, first RNA-binding domain | Homo sapiens | N/A | N/A |
| pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol) | ||||||||
| external links |
| |
| other info | key to JOY annotation | show related PDB structures | |
| alignment | show WITH Pfam family sequences |
10 20 30 40 50
1jmta ( 43 ) sqtIALlniyrnpqdglrsavsdvemqehydeffeeVf
1qm9a1 ( 111 ) knfqnifppsAtLhLsnipp---------------svs----eedLk
1a9nb ( 6 ) irpnhTIyInnMnd---------------kikkeelkrsLy
1nu4a ( 7 ) rpnhTIYInnLne---------------kikkdeLkksLh
2u1a ( 1 ) mapaqplsenppNhiLfltnLpe---------------etn----elmLs
1qm9a2 ( 1 ) mgnsvLlVsnLnpe--------------rvt----pqslf
1hd1a ( 98 ) kMfIggLsw---------------dTt----kkdLk
1l3ka1 ( 8 ) kepe--qlR-kLfIggLsf---------------eTt----desLr
2msta ( 110 ) kIfVggLsv---------------nTt----vedVk
1iqta ( 183 ) kIfVGglsp---------------dTp----eekIr
2u2fa ( 1 ) ahkLfIgglpn---------------yln----ddqVk
1oo0b ( 64 ) pgpqrsveGwiLfVtsIhe---------------eAq----edeIq
1cvja1 ( 11 ) a-sLyVGdLhp---------------dVt----eamLy
1h6kx ( 38 ) ksctLyVgnLsf---------------yTt----eeqIy
1fxla2 ( 37 ) skT-nLiVnyLPq---------------nmt----qeeFr
1fxla1 ( 119 ) sasi--rdA-nLyVsgLpk---------------tmt----qkeLe
1cvja2 ( 91 ) pslrksgvG-nIfIknLdk---------------sId----nkaLy
1fjeb2 ( 92 ) dskkvraar-TLlAknLsf---------------nIt----edeLk
1fjeb1 ( 1 ) gshmvegsesttpfnlfIgnLNp---------------nksvaeLkvaIs
1u2fa ( 1 ) arrLyVgnIpf---------------git----eeaMm
bbbbb aaaaa
60 70 80 90 100
1jmta ( 87 ) teMeekyg----------eVeeMnVcdnlg--dhlvGnVyVkFrreedAe
1qm9a1 ( 139 ) vlFssnGg----------vvkgfkffqkdr------kmAlIqMgsveeAv
1a9nb ( 32 ) alFsq-fg----------hVvdIvAl--ktmkm--rgqAfVIFkelgsSt
1nu4a ( 32 ) aiFsr-fg----------qIldIlVs--rslkm--rGqAfVIFkevssAT
2u1a ( 32 ) mlFnq-fp----------GfkevrLvpg------rhdiAfVeFdnevqAg
1qm9a2 ( 23 ) ilFgv-yg----------dVqrVkilfnk------kenAlVqMAdgnqAq
1hd1a ( 115 ) dyFsk-fg----------eVvdCtlkLdp-itgrsrgfGfVlFkesesvd
1l3ka1 ( 32 ) shFeq-wg----------tLtdCvVmrdp-ntkrSrgfGfVTYatveeVd
2msta ( 127 ) hyFeq-fg----------kVddAmLmfdk-ttnrhrgfGfVtFesedive
1iqta ( 200 ) eyFGg-fg----------eVesielpmd-nktnkrrgfCfItFkeeepvk
2u2fa ( 20 ) elLts-fg----------pLkafnlvkds-atglskgyAfCeYvdinvTd
1oo0b ( 91 ) ekFcd-yg----------eIknIhLnldr-rtgfSkgyAlVeYethkqAl
1cvja1 ( 29 ) ekFsp-Ag----------pilsIrVcrdm-itrrslgyAyVnFqqpadAe
1h6kx ( 58 ) elFsk-sg----------dIkkIimgldk-m----cgfCFVeYysradAe
1fxla2 ( 57 ) slFgs-ig----------eIesCkLvrdk-itgqslgyGfVnYidpkdAe
1fxla1 ( 143 ) qlFsq-yg----------rIitSrilvdq-vtgvsrGvGfIrFdkrieAe
1cvja2 ( 117 ) dtFsa-fg----------nIlsckVvcd--en-gSkgyGfVhFetqeAae
1fjeb2 ( 118 ) evFe--------------dAleIrlvsqdg---kskgiAyIeFkseadAe
1fjeb1 ( 36 ) elFakndL----------avvdVrtGt-------nrkfGyVDFesaedle
1u2fa ( 20 ) dfFNaqMrlggltqapgnPVlaVqinqd-------knfAfLeFrsVdett
aaa bbbbb bbbbb aaaaa
110 120 130 140 150
1jmta ( 125 ) kAvidLnnrwfng--qpihAelsp
1qm9a1 ( 173 ) qAlidLhn-hdlgenhhLrVsfsksti
1a9nb ( 67 ) nAlrqlqgfpfyg--kpMrIqyAktdsdiIskmrg
1nu4a ( 67 ) nAlrsmqgfpfyd--kpMrIqYAktdsdiiakm
2u1a ( 65 ) aArdalqgfk-itqnnaMkIsfakk
1qm9a2 ( 56 ) lAmshlnghkl--hgkpiritlskhqnvqlpregqedqglTkdygnsplh
1hd1a ( 153 ) kVmdq-keHkLng--kvIdPkra
1l3ka1 ( 70 ) aAmn-arpHkVdg--rvVePkrav-------s
2msta ( 165 ) kVce-ihfheInn--kmVeCkka
1iqta ( 238 ) kImek-kyHnvgl--skceIkva
2u2fa ( 58 ) qAiaglngmql--gdkkllVqrasvgakna
1oo0b ( 129 ) aAkeaLngaeImg--qtIqVdwcfv------kgpk
1cvja1 ( 67 ) rAldtmnfdvikg--kpVrImwsqr------d
1h6kx ( 96 ) nAmryingtrldd--riIrTdwda----------g
1fxla2 ( 95 ) kAintlnglrlqt--ktIkVsyArp------s
1fxla1 ( 181 ) eAikglngqkpsgAtepItVkfa
1cvja2 ( 153 ) rAiekmngmllnd--rkVfVgrfks------rker
1fjeb2 ( 151 ) knleekqgaeidg--rsVsLyytge--------kg
1fjeb1 ( 69 ) kAleLtg-LkVfg--neIkLekpkgr
1u2fa ( 63 ) qAma-fdgiiFqg--qsLkIrrphdyqplpg
aaaa bbbb
1jmta
1qm9a1
1a9nb
1nu4a
2u1a
1qm9a2 ( 104 ) rfkkpgs
1hd1a
1l3ka1
2msta
1iqta
2u2fa
1oo0b
1cvja1
1h6kx
1fxla2
1fxla1
1cvja2
1fjeb2
1fjeb1
1u2fa
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