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Align your sequence(s)

DNA polymerase I

class : multi domain number of structures : 4 average size : 596 average PID : 33 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1xwl rasmol 297 - 876 - DNA polymerase I Bacillus stearothermophilus 1.70 25.40
3ktq rasmol 293 A 831 A large fragment of DNA polymerase I Thermus aquaticus 2.30 21.80
2kfz rasmol 324 A 928 A klenow fragment Escherichia coli 2.03 21.50
1t7p rasmol 1 A 704 A DNA polymerase Bacteriophage t7 2.20 24.00
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : DNA_pol_A  3_5_exonuclease  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1xwl   ( 297 )    akm--aftladrV--teeMlad-----kAALvVeVVeenYHda-pIvGIA
3ktqa  ( 293 )         aleeap-------Wppp----egAfVGFvlsrkePMwA-dLlaLA
2kfza  ( 324 )    misydnYvtIldeetLkawiakLekapvFAFdTeTdsldnisA-nLVGLS
1t7pa  (   1 )                               MIVSdIeAna-llesVtkFHCGV
                         bb                   bbbbbbb          bbbbb

                           60        70        80        90        100 
1xwl   ( 337 )    VVNe-h-grFFLrpe-----------tAladpqFvaWLgdetkkKSMfds
3ktqa  ( 326 )    AArg-g-rVHrAp------------epykALrdlk--------eArGLlA
2kfza  ( 373 )    FAiepg-vAAYIPVaHdyldapdqisrerALelLkpLLedekalKVGqnL
1t7pa  (  23 )    Iydystaeyvsyr----------psdFgaYLdaLeaEvar-ggLIVFHnG
                  bbb    bbbbb              aaaa aaaaaaa      bbb  a

                           110       120       130       140       150 
1xwl   ( 374 )    k-rAaVALkwk-------gieLc--gvsFDLlLAAYLLdPaqgVddVaaA
3ktqa  ( 354 )    k-dLSVLAlre-------glgLp---PgddPMLLAYLldPs--nttpegV
2kfza  ( 422 )    k-yDRGILany-------gIeLr--gIafDTmLESYIlnsvagrHdmdsL
1t7pa  (  62 )    HkyDvpALtkLAklqlnreFhLpreNC-IDTlvLsrLIhsnlkdTdmgll
                  a aaaaaaa                 b bbaaaaaaaa        aaaa

                           160       170       180       190       200 
1xwl   ( 414 )    AkmkqyeaVrpdeaVYgkga------------------kra---vpdepv
3ktqa  ( 391 )    ArrYg--gewte--------------------------------------
2kfza  ( 462 )    AerwlkhkTitfeeIAgkgk------------------nqltFnqIaLee
1t7pa  ( 111 )    rsgklpgaleawgyrLGemkgeYkddfkrmleeqgeeyvdgmEwwnfnee
                  aa         aaaaa                                aa

                           210       220       230       240       250 
1xwl   ( 443 )    LAeHLVrKAaAIweLerpFldeLrr--------------ne-QdrLLveL
3ktqa  ( 401 )    ---eAGerAALSerLfanLwgrLeg--------------eerLlwLYreV
2kfza  ( 494 )    AgryAAEdADVTLqLHlkMwpdLqk--------------hkgplnVFenI
1t7pa  ( 167 )    MMdyNvqdVvvTkaLLekLlsdkhYFppeidFtdvgyttFwseSleAVdI
                  aaaaaaaaaaaaaaaaaaaaaa                  aaaaaaaaa 

                           260       270       280       290       300 
1xwl   ( 478 )    EqpLSsiLAeMEfaGVkVdtkrLeqmgkeLaeqlgtveqrIyelAg----
3ktqa  ( 434 )    ErpLSaVLAhMEatgVrLdvayLraLsleVaeeiarLeaeVfrlAg----
2kfza  ( 530 )    EMpLVpVLSrIerngVkIdpkvLhnHseeLtlrlaelekkAheiag----
1t7pa  ( 217 )    EHrAAwLLAkQerNGFPFdtkaIeeLyveLaarrseLlrkLtetFgswyq
                  aaaaaaaaaaaaaa  b  aaaaaaaaaaaaaaaaaaaaaaaaa      

                           310       320       330       340       350 
1xwl   ( 524 )    ----------------------------------------qefnInspkq
3ktqa  ( 480 )    ----------------------------------------hpfnLnsrdq
2kfza  ( 576 )    ----------------------------------------eeFnlsstkq
1t7pa  ( 267 )    pkgGtemfchprtgkplpkypriktPkeyvagapytpvehvvFnPssrdh
                                                                  aa

                           360       370       380       390       400 
1xwl   ( 534 )    LGvILFeklqlpvlkktk--tgysTsadvLekLa----pyheIVenIlhy
3ktqa  ( 490 )    LerVLFdelgLpaigktektgkrsTsaavLeaLr----eahpIVekIlqY
2kfza  ( 586 )    LqtiLfekqgikplkkt-----pstseevLeela----ldypLPkvIley
1t7pa  ( 342 )    IqkkLqea-gwvPtkytdk-gapvVddevLegVrVddpekqaAIdlIkeY
                  aaaaaa                    aaaaaaa         aaaaaaaa

                           410       420       430       440       450 
1xwl   ( 578 )    rqLgkLqstYie---gLlkvVrpdtkkVHTiFnQAltqtGrLsstepnLq
3ktqa  ( 536 )    reltklkstyId---pLPdliHprtgrLHTrFnQtatatGrLsSsdpnLQ
2kfza  ( 631 )    rgLakLkstYTd---kLplminpktgrVhTsYhQAvtatGrLsStdPnLq
1t7pa  ( 390 )    lmIqkrIgqSAegdkAWlryvae-dgkIhGsVnpNgavtGrAtHafPnlA
                  aaaaaaaaa                     bbb         bbb     

                           460       470       480       490       500 
1xwl   ( 625 )    nIp-irleeGrkIrqAFvps--e-----sdWlIFAAdYsqIeLRVLAhiA
3ktqa  ( 583 )    nIp-vrtplGqrIRrAFiAe--e------gwlLVALdYsQIELRVLAhlS
2kfza  ( 678 )    nIp-vrneeGrrIRqAFiAp--e------dyvIVSAdYsqIeLrIMAhlS
1t7pa  ( 439 )    qIpgvrspyGeqCRaAFGAehhldgitgkpWvQAGIdAsGLELrCLAhfM
                         aaaaaaa                bbbbbbbb  aaaaaaaaa 

                           510       520       530       540       550 
1xwl   ( 667 )    eD---dnLmeAFrrdldIHtkTAmdIfqvsedeVtpnmrrqAkaVNfGIv
3ktqa  ( 624 )    gD---enLirVFqegrdiHtetASwmfgvpreaVdplmrraAktINFgVL
2kfza  ( 719 )    rd---kgLltaFaegkdIHraTAaeVfglpletVtseqrrsAkaINfgLI
1t7pa  ( 489 )    ArfdngeyaheIlng-dIHtknqiaA-eLp-------trdnAktFiYgFL
                       aaaaaaaa    aaaaaaaaa    333  aaaaaaaaaaaaaaa

                           560       570       580       590       600 
1xwl   ( 714 )    ygIsdygLaqnLnisrkeAaefierYfesFpgVkryMenivqeAk---qk
3ktqa  ( 671 )    ygMsahrLSqelaipyeeAqafieryfqsfpkVrawiektleeGr---rr
2kfza  ( 766 )    yGmsafgLArqlniprkeAqkymdlYferYpgVleYmertraqAk---eq
1t7pa  ( 530 )    ygagdekIGqiVgagkerGkeLkkkflentpaIaaLresiqqtLvekwkr
                      aaaaaaaa   aaaaaaaaaaaaaa  aaaaaaaaaaaaaa   aa

                           610       620       630       640       650 
1xwl   ( 761 )    gyVtTllhRrryLpdItsrnfnvrsfAermAmnTPIqGSAADIIKkAMid
3ktqa  ( 718 )    gyVeTlFGRrryVpdLearvksvreaAermAfnMPVqGTaADLMKlAMvk
2kfza  ( 813 )    gyVeTldgRrlyLpdIkssngarraaaeraAInAPMqGTAADIIKrAMia
1t7pa  ( 591 )    rwikglDgRkVhVr------------sphaAlntlLqSAGaLICKlWIik
                   bbb     bbb        aaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

                           660       670       680       690       700 
1xwl   ( 811 )    LnarLkeerL------qAhLLLQVhdeLILEAp-keeMerLcrlVPevMe
3ktqa  ( 768 )    LfprLeem--------gArMLLQVhDELVLEAp-kerAeaVarlAkevMe
2kfza  ( 863 )    Vdawlqaeqp------rVrMIMQVhdELVFEVh-kddvdavakqIhqlMe
1t7pa  ( 629 )    TeemLvekglkHgwdgdFAYMAWVhDEIQVGCrteeiAqvVieTAqeAMr
                  aaaaaaa           bbbbb   bbbbbbb    aaaaaaaaaaaaa

                           710       720    
1xwl   ( 854 )    qAv---tLrVpLkVdyhygstWydAk
3ktqa  ( 809 )    gVy---pLaVpLeVevgigedWlsAk
2kfza  ( 906 )    ncT---rldVpLlVevgsgenWdqAh
1t7pa  ( 679 )    wVgdhwnFrClLdTeGkmgpnWaiCh
                  a            bbbbbb       


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