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Align your sequence(s)

retroviral proteinase

class : all beta number of structures : 6 average size : 106 average PID : 37 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1yti rasmol 1 A 99 A SIV protease Escherichia coli 2.20 21.1
1ivp rasmol 1 A 99 A HIV-2 proteinase Human immunodeficiency virus type 2 2.50 19.70
1dif rasmol 1 A 99 A HIV-1 proteinase Human immunodeficiency virus type 1 1.70 19.8
1fiv rasmol 4 A 116 A FIV proteinase Feline immunodeficiency virus 2.00 14.80
1bai rasmol 1 A 124 A Rous sarcoma virus protease Rous sarcoma virus 2.4 17.5
2fmb rasmol 1 - 104 - EIAV protease Equine infectious anemia virus 1.8 14.3
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : rvp  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1ytia  (   1 )      pqfhl--wkrpvvtAhIe----------gqpveVlLdtgaddSiVt--
1ivpa  (   1 )      pqfsl--wkrpvvtAyIe----------gqpveVlLdtgaddSiVa--
1difa  (   1 )      pqitl--wqrplVtIkIg----------gqlkeAlldtgaddTvLe--
1fiva  (   4 )    vgttttl--ekrpeIlIfVN----------gypikFlldtgadiTiLNrr
1baia  (   1 )      lamtmehkdrplVrViLtNtgshpVkqrsvyItAlldtgaddTVISee
2fmb   (   1 )      vtynl--ekrpttiVlIn----------dtpLnVlldtgAdtSVLtta
                               bbbbbb            bbbbbbb       bb   

                           60        70        80        90        100 
1ytia  (  35 )    ---gIeLgphytpk---ivggiggfinTkey-knveVeVl---g---kri
1ivpa  (  35 )    ---gIeLgnnyspk---ivggiggfinTley-knVeIeVl---n---kkv
1difa  (  35 )    ---emsLpgrwkpk---miggiggfikVrqY-dqilIeIc---g---hkA
1fiva  (  42 )    dFqv-knSiengrq---nmigvgggkrGtnY-inVhLeIrden-yktqci
1baia  (  49 )    dWpt---dWpvmeAanpqihgiggGipVrkSrdmIeLgVinrdgslerpl
2fmb   (  37 )    hYnrLkyrgrkyqgt--giggvggnveTfsT-p-VtIkkk---g---rhi
                             bbb   bbb    bbbbbbb b bbbbb         bb

                           110       120       130 
1ytia  (  72 )    kgtImtg---dTpiniFGrnLltaLgmslnf 
1ivpa  (  72 )    ratIMtg---dtpiniFGrnIltaLgmslnl 
1difa  (  72 )    igtVLVG---pTpvNiIGrnLLtqigctlnf 
1fiva  (  86 )    fGnVCVLednsliqplLGrdNMikFnirlvm 
1baia  (  96 )    llfPlva---mtpvniLGrdClqgLglrltnl
2fmb   (  77 )    ktrMlVA---dipvTILGrdIlqdlgaklvl 
                  bbbbbb         bb aaaaaa        


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