Papain family cysteine proteinase
|
class : alpha plus beta |
number of structures : 13 |
average size : 223 |
average PID : 40
% |
PDB
code |
start
residue |
start
chain |
end
residue |
end
chain |
name |
source |
resolution |
R-factor |
1mem
 |
1 |
A |
211 |
A |
cathepsin K |
Homo sapiens |
1.80 |
18.3 |
1icf
 |
1 |
A |
220 |
B |
cathepsin L |
Homo sapiens |
2.00 |
18.2 |
8pch
 |
1 |
A |
212A |
A |
cathepsin H |
Sus scrofa |
2.1 |
N/A |
1gec
 |
1 |
E |
216 |
E |
glycyl endopeptidase |
Carica papaya |
2.10 |
19.6 |
1ppo
 |
1 |
- |
216 |
- |
papaya proteinase |
Carica papaya |
1.80 |
15.50 |
1ppn
 |
1 |
- |
212 |
- |
papain |
Carica papaya |
1.6 |
15.96 |
1yal
 |
1 |
- |
218 |
- |
chymopapain |
Carica papaya |
1.70 |
19.2 |
1cqd
 |
3 |
A |
218 |
A |
ginger protease II |
Zingiber officinale |
2.10 |
21.3 |
2act
 |
1 |
- |
218 |
- |
actinidin |
Actinida chinensis |
1.70 |
16.50 |
1aim
 |
1 |
- |
212 |
- |
cruzipain (cruzain) |
Trypanosoma cruzi |
2.0 |
18.8 |
1the
 |
1 |
A |
253 |
A |
cathepsin B |
Rattus norvegicus |
1.90 |
17.0 |
1huc
 |
1 |
A |
254 |
B |
cathepsin B |
Homo sapiens |
2.1 |
16.4 |
1deu
 |
1 |
A |
242 |
A |
cathepsin X [proregion removed] |
Homo sapiens |
1.70 |
20.4 |
|
pir |
ali |
malform |
joy-html |
colour postscript |
postscript |
superimposed coordinates
(RasMol)
|
10 20 30 40 50
1mema ( 1 ) apdsvdYrkk----gyVTpVknQg---qÇgSCWAfSSVgALEGqlkkktg
1icfa1 ( 1 ) aprsvdwrek----gyVTpVknqg---qÇgScWAFSATgALEGQmfrktg
8pcha ( 1 ) yppsmdwrkkg---nfVSpVknqg---sÇgScWTFSTTgALESAvAiatg
1gece ( 1 ) lpesvdwrak----gAvTpVkhqg---yÇeSCWAFSTVaTVEGInkiktg
1ppo ( 1 ) lpenVdwrkk----gAVTpVrhqg---sÇgScWAFSAVaTVEGInkirtg
1ppn ( 1 ) ipeyvdwrqk----gAVTpVknqg---sÇgSCWAFSAVvTIEGIIkirtg
1yal ( 1 ) ypqsidwrak----gAVTpVknqg---aÇgS WAFSTIaTVEGiNkivtg
1cqda ( 3 ) lpdsidwren----gAVVpVknQg---gÇgSCWAFSTVaAVEGiNqivtg
2act ( 1 ) lpsyvdwrsa----gAVvdIksQg---eÇgGCWAFSAIaTVEGiNkitsg
1aim ( 1 ) apaaVdwrar----gAVTaVkdqg---qÇgSCWAFSAIgNVECqwflagh
1thea ( 1 ) lpesfdAreqwsnÇptIaqiRdQG---sÇgSCWAFGAVeAMSDRiÇihtn
1huca ( 1 ) lpasfdAreqwpqÇptIkeIRdqG---sÇgScWAFGAVEAISDRiÇIhtn
1deua ( 1 ) lpkswdwrnvd-gvnyaSitrnQhipqyÇgScWAHASTSAMADRInikrk
bb aaaaaaaaaaaaaaaaa
60 70 80 90 100
1mema ( 44 ) ---kllnLSPQNLVDÇVs--eNdGçgGGyMtnAFqyVqkn--rGIDse--
1icfa1 ( 44 ) ---rlisLSEQNLVDÇSgpqgNeGçngglMdyAFqYVqdn--gGLDse--
8pcha ( 44 ) ---kmlsLAEQQLVDÇAqnFnNhGçqgglPsQAFEYIryn--kGIMGe--
1gece ( 44 ) ---nlveLSEQELVDÇDl--qSyGçnrGyQstSLqyVaq---nGIHlr--
1ppo ( 44 ) ---klveLSEQELVDÇEr--rShGçkgGyppyALeyVak---nGIhlr--
1ppn ( 44 ) ---nlneYSEQELLDÇDr--rSyGçngGypwsALqlVAq---yGIHyr--
1yal ( 44 ) ---nlleLSEQELVDÇDk--hSyGçkgGyQttSLqyVAn---nGVHts--
1cqda ( 46 ) ---dlisLSEQQLVDÇTt--aNhGçrggwMnpAFqfIvnn--gGINse--
2act ( 44 ) ---slisLSEQELIDÇgrtqnTrGçdgGyItdGFqfIind--gGINte--
1aim ( 44 ) ---pltnLSEQMLVSçDk--tDsgçsGGlMnnAFewIvqenngaVyte--
1thea ( 48 ) gr-vnveVSAEDLLTÇÇgiqÇgdgÇnGGypsgAWnFWtr---kGLVsGGv
1huca ( 50 ) vsveVSAeDLLTÇÇgsmÇgdgÇngGypaeAWnfWtr---kGLVsGGl
1deua ( 50 ) gawpsTlLSVQNVIDçGn--Ags-ÇeggnDlsVWdyAhq---hGIPde--
aaaaaaa aaaaaaaaaa
110 120 130 140 150
1mema ( 84 ) -----daypyvg---q---------------eesçmyn-pt---------
1icfa1 ( 87 ) -----esYpyea---t---------------eesçkyn-pk---------
8pcha ( 84 ) -----dtYpykg---q---------------ddhçkfq-pd---------
1gece ( 84 ) -----akYpyia---k---------------qqtçranqvg---------
1ppo ( 84 ) -----skYpyka---k---------------qgtçrAkqvg---------
1ppn ( 84 ) -----ntYpyeg---v---------------qryçrsrekg---------
1yal ( 84 ) -----kvYpyqa---k---------------qykçratdkp---------
1cqda ( 87 ) -----etYpyrg---q---------------dgiçnstvn----------
2act ( 87 ) -----enYpyta---q---------------dgdçdvalqd---------
1aim ( 84 ) -----dsypyaSgegi---------------sppçttsgh----------
1thea ( 94 ) ynshigÇlPYtippÇEhhvngarppçtgegdtpkçnk---mÇea----gy
1huca ( 94 ) yeshvgÇrpYsippÇEhhvngsrppçtgegdtpkçsk---iÇep----gy
1deua ( 92 ) -----tçnnyqAk------------------dqeçdkfnqÇGtçnefkeç
160 170 180 190 200
1mema ( 101 ) ------gkaakCrgyreIpegnekaLkraVarvGPVSVaIDAsltsFqfY
1icfa1 ( 104 ) ------ysvAnDtgfvdIpk-qekaLmkaVAtvGPISVaIdAghesFlfy
8pcha ( 102A) ------kAiAfVkdVanitmndeeaMveAVAlyNPVSFaFeV-tndFlmy
1gece ( 102 ) ------gpkvkTngvgrvqsnnegsLlnaIAh-qPVSVVVEsagrdFqny
1ppo ( 102 ) ------gpivkTsgvgrvqpnnegnLlnaIAk-QPVSVvVEskgrpFqlY
1ppn ( 102 ) ------pyaakTdgvrqVqpynegaLlysIAn-qPVSVvLeAagkdFqlY
1yal ( 102 ) ------gpkvkItgykrVpsn etsFLgaLan-qPLSVlVeAggkpFqlY
1cqda ( 104 ) ------apvVsIdsyenVpshneqsLqkaVAn-qPVSVTMdAagrdFqly
2act ( 105 ) ------qkyVtIdtyenVpynnEwaLqtaVty-qPVSVaLdAagdaFkqy
1aim ( 101 ) ------tvgAtItghveLpq-deaqIAawLAvnGPVAVAVDAs--sWmtY
1thea ( 137 ) stsykedk-hyGytsysvsd-sekeImaeIyknGPVEGaFtV-fsdFlty
1huca ( 137 ) sptykqdk-hyGynsysvsn-sekdImaeIyknGPVEGaFsv-ysdFllY
1deua ( 119 ) hairnytl-wrVgdygsls--grekMMaeIyanGPISÇGIma-terLany
bbbb aaaaaaaaaa bbbbb aaaa
210 220 230 240 250
1mema ( 145 ) skgVyydesÇns--dnlnHaVLAVGYgiqk--gnkhWIIkNswgenwGnk
1icfa1 ( 147 ) kegiyfepdÇss--edmdHGVLVVGYGfest nnkyWLVkNswgeewGmg
8pcha ( 145 ) rkgiysstsÇhktpdkvnhAVLAVGYgee-n-gipyWiVkNswgpqwGmn
1gece ( 145 ) kggifeG-sçgt---kvdHaVTAVGYGksg--gkgyILIkNswGpgWGen
1ppo ( 145 ) kggifeG-pçgt---kvdHAVTAVGYGksg--gkgyIlIKNswgtawGek
1ppn ( 145 ) rggifvG-pçgn---kvdHAVAAVGYGp------nyILIKNswgtgwGen
1yal ( 145 ) ksgVfdG-pçgt---kldHAVTAVGYGtsd--gknyIIIKNswGpnwGek
1cqda ( 147 ) rsgIFtg-sçni---sAnHALTVVGYgten--dkdfWiVkNswgknwGes
2act ( 148 ) asgiftG-pçgt---avdHAIVIVGYGteg--gvdyWIVKNswdttwGee
1aim ( 145 ) tggvmt--sÇvse--aldHGVLLVGYnds-a-avpyWIIkNswttqwGee
1thea ( 184 ) ksgVykheagd---vmggHAIRILGWGien--gvpyWlVANSWnadWGdn
1huca ( 184 ) ksgVYqhvtge---mmggHAIRILGWGven--gtpyWlVANSwntdWGdn
1deua ( 165 ) tggiYaeyqdt---tyinHvVSVAGWgisd--gteyWIVRNswgepwGer
bb bbbbbbbbbbb bbbbbbb
260 270 280
1mema ( 185 ) GyIlMARnk----n---naÇGIAnlASfPkm
1icfa1 ( 197 ) GyVkMAKdr----r---nhÇGIAsaASyPtv
8pcha ( 185 ) GyFlIerg-----k---nmÇGLAAcASyPip-lv
1gece ( 189 ) GyIrIrras----gnspGvÇGVYrSSyyPikn
1ppo ( 189 ) GyIrIkrap----gnspGvÇGLYksSyyPtkn
1ppn ( 185 ) GyIrIkrgt----gnsyGvÇGLYtsSfyPvkn
1yal ( 189 ) GyMrLkrqs----gnsqGtÇGVYksSyyPfKgfa
1cqda ( 191 ) GyIrAeRni----enpdGkÇGITrfASyPvkk
2act ( 192 ) GyMrIlRnv----g-gaGtÇGIAtmPSyPvky
1aim ( 185 ) GyIrIakg--------snqÇlVkeeASSAvvg
1thea ( 229 ) GfFkIlrge--------nhcgIEseIvAGiPrt
1huca ( 229 ) GfFkIlrgq--------dhcgIEseVvAGiprtd
1deua ( 210 ) GWLrIVTstykdgkGaryNLAIeehÇTfGdPiv
bbbbb 333 bbbb