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Align your sequence(s)

Helicase conserved C-terminal domain

class : alpha beta number of structures : 5 average size : 163 average PID : 28 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1d9x rasmol 415 A 595 A deoxyribonucleic acid repair protein uvrB Bacillus caldotenax 2.60 25.6
1c4o rasmol 410 A 583 A excinuclease ABC subunit B Thermus aquaticus 1.50 25.2
1hv8 rasmol 211 A 365 A probable ATP-dependent RNA helicase mj0669 Methanococcus jannaschii 3.00 27
1fuk rasmol 233 A 394 A eukaryotic initiation factor 4a Saccharomyces cerevisiae 1.75 22.1
1hei rasmol 326 A 480 A RNA helicase Hepatitis C virus 2.1 22
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : helicase_C  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1d9xa  ( 415 )          tglldPtIdvr-ptk--------gqiddLigeIrervernerTL
1c4oa  ( 410 )          tglldPlVrvk-pte--------nqildLMegIreraargErTL
1hv8a  ( 211 )          nanIeQsYvev-nen--------erfeaLcrlLknke--f-YGL
1fuka  ( 233 )             ikqfyvnVeeee--------yKyecLtdLydsIs--vtqAV
1heia  ( 326 )    pgsvtvshpnIeevaLsttgeIpFygkAI-----plevIkg-----grHL
                              bbbb              aaaaaaaaa         bb

                           60        70        80        90        100 
1d9xa  ( 450 )    VTTltkkmAedLtdyLkeagIkVAylhseiktlerieiirdLrlgkydVL
1c4oa  ( 445 )    VTVltvrmAeeltsfLvehgIrAryLhheldafkrqalIrdLrlghYdCL
1hv8a  ( 243 )    VFCktkrdTkeLas-LrdigFkAgaIHgdlsqsqrekvIrlFkqkkirIL
1fuka  ( 264 )    IFCntrrkVeeLTtkLrndkftVSAIysdlpqqerdtimkeFrsgsSrIL
1heia  ( 366 )    IFChskkkCdelaakLvalgInAvayyrgld----vsvip---tngdVVV
                  bb   aaaaaaaaaaaa     bbbb         aaaaaaa      bb

                           110       120       130       140       150 
1d9xa  ( 500 )    VGinLlregLdIPeVSLVAILdADke------------------gflRse
1c4oa  ( 495 )    VGinLlregLdIpeVSLVAILdAdke------------------gflRse
1hv8a  ( 293 )    IAtd-vSrgidvndLncVINyhLpq-----------------------np
1fuka  ( 314 )    IStdllArgIdVqqvsLVINYdLPa-----------------------nk
1heia  ( 409 )    VStdaLmtg-fTgdFdSVIDCNtcvtqtvdfsldptftietttlp--Qda
                  bb              bbbb                              

                           160       170       180       190       200 
1d9xa  ( 532 )    rSLiqTIgrAarna-nGhVIMYA-dtitksMeiAiqeTkrrr--aiqeey
1c4oa  ( 527 )    rSLiqTIgrAarNa-rGeVWLYA-drvseaMqrAieeTnrrr--alqeay
1hv8a  ( 320 )    esY-hRIgrTgragkkGkAISIInrreykkLryIera-kLkIkklk    
1fuka  ( 341 )    enYihRigrgG-----gVAINFVtnedvgaMreLekfystqIeelps---
1heia  ( 456 )    vsRtqRRgRTGr-gkpGiYrfva--------pge                
                                   bbbbb      aaaaaaaa              

                           210      
1d9xa  ( 578 )    nrkhgivprtvkkeirdv
1c4oa  ( 573 )    nlehgitpetv       
1hv8a                               
1fuka  ( 388 )    -----------diatlln
1heia                               
                                    


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