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Align your sequence(s)

Lipocalin family

class : all beta number of structures : 15 average size : 161 average PID : 20 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1i4u rasmol 1 A 181 A crustacyanin C1 subunit Homarus gammarus 1.15 15.0
1bbp rasmol 2 A 178 A Bilin binding protein Pieris brassicae 2.0 20
1exs rasmol 1 A 160 A beta-lactoglobulin 1A Sus scrofa 2.39 21.9
1beb rasmol 5 A 160 A beta-lactoglobulin Bubalus bubalis 1.8 18.1
2a2u rasmol 1 A 158 A major urinary protein Rattus norvegicus 2.50 24.8
1jv4 rasmol 1 A 157 A major urinary protein 2 Mus musculus 1.75 20.6
1ew3 rasmol 23 A 181 A Allergen Equ C 1 Equus caballus 2.30 19.5
1bj7 rasmol 7 - 156 - allergen Bos D 2 Bos taurus 1.8 18.4
1e5p rasmol 3 A 151 A aphrodisin Cricetus cricetus 1.63 19.4
1hn2 rasmol 1001 A 2157 B odorant-binding protein Bos taurus 1.80 20.2
1dzk rasmol 10 A 157 A odorant-binding protein Sus scrofa 1.48 22.6
1iiu rasmol 2 A 175 A plasma retinol-binding protein Gallus gallus 2.50 21.1
1aqb rasmol 1 - 175 - plasma retinol-binding protein Sus scrofa 1.65 18.4
1epa rasmol 3 A 162 A Epididymal retinoic acid-binding protein Rattus norvegicus 2.1 19.6
1qqs rasmol 4 A 177 A neutrophil gelatinase-associated lipocalin Homo sapiens 2.40 21.9
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : lipocalin  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1i4ua  (   1 )    dkipdfvvpgkÇasVdrnklwaeqt-pnrnsYagvWyQfAlTnNp-----
1bbpa  (   2 )        nvyhdgaçpeVk---pvdnF---dwsnYhgkWwEvAkYpNs-----
1exsa  (   1 )                     vevtpimteldtqkvagtwhTVamAVSdvslld
1beba  (   5 )                         qtmkgLdiqkVagtWySLAMAASdislLd
2a2ua  (   1 )               eeASstrg------nLdvakLngdWfSIVVASnkrekIe
1jv4a  (   1 )               eeasStgr------nFnvekIngeWhTIILASdkrekIe
1ew3a  (  23 )               vair----------nFdiskIsgeWySIFLASdvkekIe
1bj7   (   7 )                              idpskIpgeWrIIyAAAdnkdkIv
1e5pa  (   3 )                                faeLqgkWyTIvIAAdnlekIe
1hn2a  (1001 )                       aqeeeaeqnlselsgpWrTVyIGStnpekIq
1dzka  (  10 )                                 felsgkWiTSyIGSsdlekIg
1iiua  (   2 )                 mdçrvssfkvkenFdknrYsgtWyAmaKkdPe-----
1aqb   (   1 )                erdçrVssFrvkenFdkarFsgtWyAmaKkdPe-----
1epaa  (   3 )                           vkdFdiskFlgfWyEIAfAsk------
1qqsa  (   4 )            tsdlipApplskVplqqnFqdnqFqgkWyVVGLAGNai--lr
                                                   bb bbbbbb        

                           60        70        80        90        100 
1i4ua  (  45 )    ----yQlIekÇVrNeYsfdg--kqFvIeSTGiay----dgnllkrnGkLy
1bbpa  (  37 )    ----vEkyGkÇGwAeYtpeg--ksVkVsNyHVi-----hGkeyfiegtAy
1exsa  (  34 )    akssPlkA---YVegLkptp-egdLeIlLqkren-----dkçaqevllAk
1beba  (  34 )    aqsApLrV---yVeeLkPtp-egdLeilLqkwen-----geçaqkkiiAe
2a2ua  (  34 )    -engsMrv---FMqhIdvle--nSLGfkFriken-----geçrelylvAy
1jv4a  (  34 )    -dngnFrL---FLeqIhvle--ksLvLkFHtvrd-----eeçselsmvAd
1ew3a  (  52 )    -engsMrV---FVDvIrald-nssLyAeYQtkvn-----geÇtefpmvFd
1bj7   (  31 )    -egGpLRn---YYrrIeÇindçesLsItFylkdq-----gtçllltevAk
1e5pa  (  25 )    -eggplrf---YFRhIdçyknÇs-eeitFyvitn-----nqçskttviGy
1hn2a  (1032 )    -engpfrt---yfreLvFddekgtVdfyFsVkrd-----gkwknvhvkAt
1dzka  (  31 )    -enapFQV---FMrsIeFddkeskVyLnFfSken-----giçeefsliGt
1iiua  (  34 )    ----glFLqdNVvAqFtVde-ngqMsAtAkGrVrlfnnwdvçAdMiGsFt
1aqb   (  34 )    ----glFLqdnIvAeFsvde-nghMsAtAkGrVrllnnwdvçAdMvGtFt
1epaa  (  33 )    ----eekM---GAmvVelke--nllalttTyyse-----dhçvlekvtAt
1qqsa  (  44 )    edkdpqkM---yATiYeeke-dasYNVTSvlfrk-----kkçdyairtFv
                             bbbbbbb      bbbbbbbbb       bbbbbbbbbb

                           110       120       130       140       150 
1i4ua  (  85 )    pnpf-gepHLsIdYe------nsfaapLVILeTdysnYAÇLYSÇidyn-f
1bbpa  (  76 )    PvgdskiGkIyHkLtygg---vtkenvFnVLsTdnknYIIGYyÇkydedk
1exsa  (  75 )    ktdi--pavfkIn------aLd--EnqLflldtdydshLLLÇMensaspe
1beba  (  75 )    ktki--pAvFkId------aln--EnkvlVldTdykkyLLfÇMensaepe
2a2ua  (  73 )    ktpe--dgeyfve------ydg--gNtftIlkTDydrYVMFhliNfk--n
1jv4a  (  73 )    ktek--ageYsvt------ydg--fNtFtIpkTdydnFLMAhLiNek--d
1ew3a  (  92 )    ktee--dgvYsLn------ydg--yNvFrIseFendehIILyLvNfd--k
1bj7   (  72 )    rqe---gyvYvle------fyg--tNtLeVIhVs-enMLVTyveNy--dg
1e5pa  (  66 )    lkg---ngtYetq------feg--nnifqPlyit-sdKIFFtnkNd--ra
1hn2a  (1073 )    kqd---dgtYvad------yeg--qnvfkivsls-rthLVahniNvd-kh
1dzka  (  72 )    kq-e--gntYdVn------yag--nNkFvvsyas-etALIIsNiNvd-ee
1iiua  (  79 )    dted--pAkFkMkYwGvasfLqkgnddHwVVdTdydtyALHYSÇrelned
1aqb   (  79 )    dted--pAkFkMkYwGvasfLqkgnddHwIIdTdYdtYAVQYSÇrlqnld
1epaa  (  69 )    egdg--pAkfqVtr--l-----sgkkevvVeaTdyltyaIiditslv--a
1qqsa  (  85 )    pgcq--pGeFtLgn--iksypgLtsYlVrVVsTnynqhAmVFFkkvs--q
                  b        bbbb           bbbbbbbbb    bbbbbbbbb    

                           160       170       180       190       200 
1i4ua  ( 127 )    g-yhSDFSFIFSrsa-nLadqyvkkÇeaaFknin-Vdttr--fvkTvQgs
1bbpa  ( 126 )    k-ghqDFVWVLSrsk-vltgeaktaVenyligSpvVdsqk--Lvysdfse
1exsa  ( 115 )    ---hsLQSLartl-evddqirekFedaLktls-vp---MrIlpaqlee
1beba  ( 115 )    q---slQCLVrtp-evddeAlekFdkaLkalp-mh----irlsfnptq
2a2ua  ( 111 )    ge-tfqLMvLYGrtk-dLssdikekFaklCeahg-Itrdn--iidLTktd
1jv4a  ( 111 )    ge-tFqLMGLYGrep-dLssdikerFaqlCeehg-Ilren--iidLsnan
1ew3a  ( 130 )    dr-pFqLFeFYArep-dvspeikeeFvkiVqkrg-Ivken--iidLTkid
1bj7   ( 108 )    er-iTkMTEGLAkgt-sFtpeelekYqqlNserg-Vpnen--ienLiktd
1e5pa  ( 103 )    gq-eTn-IVVAGkgn-aLtpeeneiLvqfAhekk-Ipven--ilnIlatd
1hn2a  (1110 )    gq-tTeLTeLfvkl--nvedeDlekFwklTedkg-Idkkn--VvnFlene
1dzka  ( 109 )    gd-kTiMTGLLgkgt-diedqDlekFkevTreng-Ipeen--ivnIierd
1iiua  ( 127 )    gtçadSYSFVFSrdpkglppeaqkivrqrqidLç-ldr---kYrvIvhng
1aqb   ( 127 )    gtçadSYSFVFArdphgfspevqkivrqrqeeLç-lar---qYriIthng
1epaa  ( 108 )    ga-vhrtMkLYSrsl-ddngeAlynFrkiTsdhg-Fsetd--LyiLkhdl
1qqsa  ( 129 )    nr-eyFkITLYgrtk-eltselknnFirfSksLg-Lpenh--IvfPvpid
                      bbbbbbbb       aaaaaaaaaaaaa     333  bbb     

                           210 
1i4ua  ( 172 )    sÇpydtQktl
1bbpa  ( 173 )    aaçkvn    
1exsa  ( 157 )    qÇrv      
1beba  ( 156 )    Leeqç     
2a2ua  ( 156 )    rÇl       
1jv4a  ( 156 )    rç        
1ew3a  ( 175 )    rÇfqlrg   
1bj7   ( 153 )    nÇpp      
1e5pa  ( 148 )    tÇpe      
1hn2a  (2154 )    n---hph   
1dzka  ( 154 )    dÇpa      
1iiua  ( 173 )    fÇs       
1aqb   ( 173 )    yÇd       
1epaa  ( 153 )    tÇVkvLqsaa
1qqsa  ( 174 )    qçId      
                            


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