Home   |   Search   |   Browse   |   Software   |   Help   

Align your sequence(s)

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

class : alpha plus beta number of structures : 20 average size : 87 average PID : 23 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1jmt rasmol 43 A 146 A splicing factor U2AF 35 kDa subunit Homo sapiens 2.20 22.60
1qm9 rasmol 111 A 198 A polypyrimidine tract-binding protein, RNA binding fragment Homo sapiens N/A N/A
1a9n rasmol 6 B 99 B U2 B, N-terminal domain, residues 4-99 Homo sapiens 2.38 28.20
1nu4 rasmol 7 A 97 A U1A RNA binding domain Homo sapiens 1.80 20.30
2u1a rasmol 1 - 88 - U1 small nuclear ribonucleoprotein A RNA binding domain 2, RBD2 Homo sapiens N/A N/A
1qm9 rasmol 1 A 110 A polypyrimidine tract-binding protein, RNA binding fragment Homo sapiens N/A N/A
1hd1 rasmol 98 A 172 A heterogeneous nuclear ribonucleoprotein D0 RNA-binding domain Homo sapiens N/A N/A
1l3k rasmol 8 A 91 A heterogeneous nuclear ribonucleoprotein A1 RNA-recognition motif domain Homo sapiens 1.10 15.60
2mst rasmol 110 A 184 A musashi1 RNA-binding domain Mus musculus N/A N/A
1iqt rasmol 183 A 257 A heterogeneous nuclear ribonucleoprotein D0, C-terminal domain Homo sapiens N/A N/A
2u2f rasmol 1 A 85 A splicing factor U2AF 65 kD subunit, second RNA-binding domain Homo sapiens N/A N/A
1oo0 rasmol 64 B 155 B CG8781-PA middle fragment Drosophila melanogaster 1.85 21.50
1cvj rasmol 11 A 90 A polydenylate binding protein 1 residues 1-190 Homo sapiens 2.60 23.00
1h6k rasmol 38 X 118 X 20 kDa nuclear cap binding protein RNP domain Homo sapiens 2.00 20.32
1fxl rasmol 37 A 118 A paraneoplastic encephalomyelitis antigen HUD, N-terminal two RRM-domains Homo sapiens 1.80 19.20
1fxl rasmol 119 A 203 A paraneoplastic encephalomyelitis antigen HUD, N-terminal two RRM-domains Homo sapiens 1.80 19.20
1cvj rasmol 91 A 179 A polydenylate binding protein 1 Homo sapiens 2.60 23.00
1fje rasmol 92 B 175 B nucleolin RBD12, two N-terminal RBD domains Mesocricetus auratus N/A N/A
1fje rasmol 1 B 91 B nucleolin RBD12, two N-terminal RBD domains Mesocricetus auratus N/A N/A
1u2f rasmol 1 A 90 A splicing factor U2AF 65kD subunit, first RNA-binding domain Homo sapiens N/A N/A
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : rrm  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                            10        20        30        40        50  
1jmta   (  43 )                sqtIALlniyrnpqdglrsavsdvemqehydeffeeVf
1qm9a1  ( 111 )       knfqnifppsAtLhLsnipp---------------svs----eedLk
1a9nb   (   6 )             irpnhTIyInnMnd---------------kikkeelkrsLy
1nu4a   (   7 )              rpnhTIYInnLne---------------kikkdeLkksLh
2u1a    (   1 )    mapaqplsenppNhiLfltnLpe---------------etn----elmLs
1qm9a2  (   1 )              mgnsvLlVsnLnpe--------------rvt----pqslf
1hd1a   (  98 )                  kMfIggLsw---------------dTt----kkdLk
1l3ka1  (   8 )        kepe--qlR-kLfIggLsf---------------eTt----desLr
2msta   ( 110 )                  kIfVggLsv---------------nTt----vedVk
1iqta   ( 183 )                  kIfVGglsp---------------dTp----eekIr
2u2fa   (   1 )                ahkLfIgglpn---------------yln----ddqVk
1oo0b   (  64 )        pgpqrsveGwiLfVtsIhe---------------eAq----edeIq
1cvja1  (  11 )                a-sLyVGdLhp---------------dVt----eamLy
1h6kx   (  38 )               ksctLyVgnLsf---------------yTt----eeqIy
1fxla2  (  37 )              skT-nLiVnyLPq---------------nmt----qeeFr
1fxla1  ( 119 )        sasi--rdA-nLyVsgLpk---------------tmt----qkeLe
1cvja2  (  91 )        pslrksgvG-nIfIknLdk---------------sId----nkaLy
1fjeb2  (  92 )        dskkvraar-TLlAknLsf---------------nIt----edeLk
1fjeb1  (   1 )    gshmvegsesttpfnlfIgnLNp---------------nksvaeLkvaIs
1u2fa   (   1 )                arrLyVgnIpf---------------git----eeaMm
                                 bbbbb                          aaaaa

                            60        70        80        90        100 
1jmta   (  87 )    teMeekyg----------eVeeMnVcdnlg--dhlvGnVyVkFrreedAe
1qm9a1  ( 139 )    vlFssnGg----------vvkgfkffqkdr------kmAlIqMgsveeAv
1a9nb   (  32 )    alFsq-fg----------hVvdIvAl--ktmkm--rgqAfVIFkelgsSt
1nu4a   (  32 )    aiFsr-fg----------qIldIlVs--rslkm--rGqAfVIFkevssAT
2u1a    (  32 )    mlFnq-fp----------GfkevrLvpg------rhdiAfVeFdnevqAg
1qm9a2  (  23 )    ilFgv-yg----------dVqrVkilfnk------kenAlVqMAdgnqAq
1hd1a   ( 115 )    dyFsk-fg----------eVvdCtlkLdp-itgrsrgfGfVlFkesesvd
1l3ka1  (  32 )    shFeq-wg----------tLtdCvVmrdp-ntkrSrgfGfVTYatveeVd
2msta   ( 127 )    hyFeq-fg----------kVddAmLmfdk-ttnrhrgfGfVtFesedive
1iqta   ( 200 )    eyFGg-fg----------eVesielpmd-nktnkrrgfCfItFkeeepvk
2u2fa   (  20 )    elLts-fg----------pLkafnlvkds-atglskgyAfCeYvdinvTd
1oo0b   (  91 )    ekFcd-yg----------eIknIhLnldr-rtgfSkgyAlVeYethkqAl
1cvja1  (  29 )    ekFsp-Ag----------pilsIrVcrdm-itrrslgyAyVnFqqpadAe
1h6kx   (  58 )    elFsk-sg----------dIkkIimgldk-m----cgfCFVeYysradAe
1fxla2  (  57 )    slFgs-ig----------eIesCkLvrdk-itgqslgyGfVnYidpkdAe
1fxla1  ( 143 )    qlFsq-yg----------rIitSrilvdq-vtgvsrGvGfIrFdkrieAe
1cvja2  ( 117 )    dtFsa-fg----------nIlsckVvcd--en-gSkgyGfVhFetqeAae
1fjeb2  ( 118 )    evFe--------------dAleIrlvsqdg---kskgiAyIeFkseadAe
1fjeb1  (  36 )    elFakndL----------avvdVrtGt-------nrkfGyVDFesaedle
1u2fa   (  20 )    dfFNaqMrlggltqapgnPVlaVqinqd-------knfAfLeFrsVdett
                   aaa                bbbbb              bbbbb  aaaaa

                            110       120       130       140       150 
1jmta   ( 125 )    kAvidLnnrwfng--qpihAelsp                          
1qm9a1  ( 173 )    qAlidLhn-hdlgenhhLrVsfsksti                       
1a9nb   (  67 )    nAlrqlqgfpfyg--kpMrIqyAktdsdiIskmrg               
1nu4a   (  67 )    nAlrsmqgfpfyd--kpMrIqYAktdsdiiakm                 
2u1a    (  65 )    aArdalqgfk-itqnnaMkIsfakk                         
1qm9a2  (  56 )    lAmshlnghkl--hgkpiritlskhqnvqlpregqedqglTkdygnsplh
1hd1a   ( 153 )    kVmdq-keHkLng--kvIdPkra                           
1l3ka1  (  70 )    aAmn-arpHkVdg--rvVePkrav-------s                  
2msta   ( 165 )    kVce-ihfheInn--kmVeCkka                           
1iqta   ( 238 )    kImek-kyHnvgl--skceIkva                           
2u2fa   (  58 )    qAiaglngmql--gdkkllVqrasvgakna                    
1oo0b   ( 129 )    aAkeaLngaeImg--qtIqVdwcfv------kgpk               
1cvja1  (  67 )    rAldtmnfdvikg--kpVrImwsqr------d                  
1h6kx   (  96 )    nAmryingtrldd--riIrTdwda----------g               
1fxla2  (  95 )    kAintlnglrlqt--ktIkVsyArp------s                  
1fxla1  ( 181 )    eAikglngqkpsgAtepItVkfa                           
1cvja2  ( 153 )    rAiekmngmllnd--rkVfVgrfks------rker               
1fjeb2  ( 151 )    knleekqgaeidg--rsVsLyytge--------kg               
1fjeb1  (  69 )    kAleLtg-LkVfg--neIkLekpkgr                        
1u2fa   (  63 )    qAma-fdgiiFqg--qsLkIrrphdyqplpg                   
                   aaaa              bbbb                            

                          
1jmta                     
1qm9a1                    
1a9nb                     
1nu4a                     
2u1a                      
1qm9a2  ( 104 )    rfkkpgs
1hd1a                     
1l3ka1                    
2msta                     
1iqta                     
2u2fa                     
1oo0b                     
1cvja1                    
1h6kx                     
1fxla2                    
1fxla1                    
1cvja2                    
1fjeb2                    
1fjeb1                    
1u2fa                     
                          


For comments or questions, please send us email. Copyright © 1997-2005 The HOMSTRAD authors