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Align your sequence(s)

Formamidopyrimidine-DNA glycosylase

class : multi domain number of structures : 4 average size : 262 average PID : 40 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1l1z rasmol 2 A 274 A MutM Bacillus stearothermophilus 1.70 22.1
1ee8 rasmol 1 A 266 A MutM (Fpg) protein Thermus Thermophilus 1.90 21.4
1k82 rasmol 1 A 268 A Formamidopyrimidine-DNA glycosylase Escherichia coli 2.10 21.4
1kfv rasmol 1 A 271 A Formamidopyrimidine DNA glycosylase Lactococcus lactis 2.55 25.1
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Fapy_DNA_glyco  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1l1za  (   2 )    pELPeVetirrtLlplIvgktIedVrIfwpnIIrhprdseaFaarMigqt
1ee8a  (   1 )    peLPEVeTTrrrLrplVlgqtLrqVvhrdparYr-------nTalAegrr
1k82a  (   1 )    pELPeVetsrrgIephLvgatIlhAvvrngr-Lrwp-VseeIyr-Lsdqp
1kfva  (   1 )    gELPeVEtvrreLekrIvgqkIisIeAtypr-Vlt--gfeqLkkeLtgkt
                    aaaaaaaaaaaaaaa    bbbbbb            aaaaa      

                           60        70        80        90        100 
1l1za  (  52 )    VrgLerrGkfLkFlL-drDALIShLrmeGrYavasaleplephThVVFcF
1ee8a  (  44 )    IleVdrrGkfLlFaLeggVELVAhLgmtGgFrle-----ptphtrAaLvL
1k82a  (  48 )    VlsVqrrAkyLLLeL-peGwIIIhLgmsGsLrilpeelppekhDHVDLvM
1kfva  (  49 )    IqgIsrrGkYLiFeIgddfrLIShlr-eGkYrlatldaprekhdHLt-kF
                    bbbbb  bbbbb    bbbbbb     bbbbb         bbbbbbb

                           110       120       130       140       150 
1l1za  ( 101 )    tdgsELRYrDvrkfGTMhVyakeeAdrrppLaelgpePlspaFspavLae
1ee8a  (  89 )    eg-rtLyFhDprrfGrLfGVrrgdyreIplLlrLgpePlseaFafpgFfr
1k82a  (  97 )    sngkvLRYtDprrfGAWlwtk--eleghnvlthlgpePlsddFnGeyLhq
1kfva  (  99 )    ad-gQLIYaDvrkfGtWeListdqvlpyFlkkkIgpePtyedFdeklFre
                      bbbbb      bbbbbb                       aaaaaa

                           160       170       180       190       200 
1l1za  ( 151 )    rAvktkrsVKaLLldqtVVAGFGNiYVDESLFrAgIlPgrpAasLsskei
1ee8a  ( 138 )    gLkesarpLkaLLldqrlAAGVgniYADEALfrArLSPfrpArsLteeeA
1k82a  ( 145 )    kCakkktaIKpWLmdnkLVVGVgNIYASESLfaAgIhPdrlAssLslaeC
1kfva  ( 148 )    kLrkstkkIKpyLleqtLVAGLGNiYVDEVLWlAkIhPekeTnqLiessI
                  aa      aaaaa          aaaaaaaaaa        333  aaaa

                           210       220       230       240       250 
1l1za  ( 201 )    erLheeMvaTIgeAvmkgGStv------------gtFqhhlyVygrqgnp
1ee8a  ( 188 )    rrLyrALreVLaeAVelgGSTlsdqsyrqPdglpGgFqtrHaVygreglp
1k82a  ( 195 )    elLArvIkavLlrSIeqgGTtl----------kpgyFaqeLqVygrkgep
1kfva  ( 198 )    hlLHdSIIeiLqkAiklgGSsi-----------stGkqnelqVygktgek
                  aaaaaaaaaaaaaaaa                     333          

                           260       270       
1l1za  ( 249 )    CkrcgtpIektvvagrgTHyCprcQr   
1ee8a  ( 238 )    CpacgrpVerrvvagrgThFCPtcQgeGp
1k82a  ( 243 )    CrvcgtpIvatkhaqraTfyCrqcQk   
1kfva  ( 245 )    CsrcgaeIqkikVagrgTHFCpvcQqk  
                          bbbbb  bbbbb         


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