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Align your sequence(s)

histocompatibility antigen-binding domain

class : alpha plus beta number of structures : 5 average size : 178 average PID : 76 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1hoc rasmol 1 A 178 A histocompatibility antigen H-2DB Mus musculus 2.40 19.80
2vab rasmol 1 A 178 A histocompatibility antigen H-2KB Mus musculus 2.50 15.90
3hla rasmol 1 A 178 A histocompatibility antigen AW2.1 Homo sapiens 2.60 16.90
2hla rasmol 1 A 178 A histocompatibility antigen AW68.1 Homo sapiens 2.60 17.30
1hsa rasmol 1 A 178 A histocompatibility antigen HLA-B*2705 Homo sapiens 2.10 20.30
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : MHC_I  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1hoca  (   1 )    gphsMryfetAvsrpgleeprYiSvGyvdnkeFVrFdSdaenprYeprAp
2vaba  (   1 )    gphsLryfvtAvsrpglgeprYmEvGyvddteFVrFdsdaenprYeprar
3hlaa  (   1 )    gshsMryfFtSvsrpgrgeprFiAvGyvddtqFVrFdsdaasqrMeprap
2hlaa  (   1 )    gshsMryfYtSvsrpgrgeprFiAvGyvddtqFVrFDsdaasqrMeprAp
1hsaa  (   1 )    gshsMryfhtSvsrpgrgeprFiTvGyVddtlFVrFdsdaasprEeprAp
                    bbbbbbbbbb        bbbbbbbb  bbbbbbb        bb   

                           60        70        80        90        100 
1hoca  (  51 )    WMeqegpeYweretqkAkgqeqwFrvsLrnllgyynqsaggshtLqqmsG
2vaba  (  51 )    wMeqEgpeywereTqkAkgnEqsfrvdLrtllgyynqskggshtIqVisG
3hlaa  (  51 )    wIeqegpeywdgetrkVkahsqtHrvdLgtLrgyynqseagshtVqrmyG
2hlaa  (  51 )    wIeqEgpeywdrnTrnVkaqsqtdrvdLgtlrgyynqseagshtiqmmyG
1hsaa  (  51 )    wIeqEgpeywdreTqickakAqtDredlrtLlryynqseagshtlqNmyG
                        aaaaaaaaaaaaaaaaaaaaaaaaaaaa         bbbbbbb

                           110       120       130       140       150 
1hoca  ( 101 )    ÇdLgsdwrllrGyLqFaYegrdYIaLnedlktWtAadmaAqitrrkweqs
2vaba  ( 101 )    ÇeVgsdgrllrGyqqyaYdgcdyIaLnedlktWtAadmAAlitkhkweqa
3hlaa  ( 101 )    ÇdVgsdwrflrGyhqYaYdgkdYIaLkedLrsWtAadmaAqttkhkweaa
2hlaa  ( 101 )    ÇdVgsdgrflrGyRqdaYdgkdYIaLkedLrsWtAadmaAqttkhkweaa
1hsaa  ( 101 )    ÇdVgpdgrllrGyhqdaYdgkdYIaLnedLssWtAadtAAqitqrkweaa
                  bbb     bbbbbbbbbb  bbbbbb      bbb  aaaaaaaaaaaa 

                           160       170      
1hoca  ( 151 )    gaaehykayLegeÇvewLhrYlkngnat
2vaba  ( 151 )    geaerlrayLegtÇVewLrrYlkngnat
3hlaa  ( 151 )    hvaeqlrayLegtÇVewLrrYlengket
2hlaa  ( 151 )    hvaeqwrayLegtÇVewLrrYlengket
1hsaa  ( 151 )    rvaeqlrayLegeÇVewLrrYlengket
                   aaaaaaaaaa aaaaaaaaaaaa    


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