aspartic proteinase
|
class : all beta |
number of structures : 13 |
average size : 332 |
average PID : 37
% |
PDB
code |
start
residue |
start
chain |
end
residue |
end
chain |
name |
source |
resolution |
R-factor |
3app
 |
1 |
- |
323 |
- |
penicillopepsin |
Penicillium janthinellum |
1.80 |
13.60 |
4ape
 |
-2 |
- |
326 |
- |
endothiapepsin |
Endothia parasitica |
2.10 |
17.80 |
2apr
 |
1 |
- |
325 |
- |
rhizopuspepsin |
Rhizopus chinensis |
1.80 |
14.30 |
5pep
 |
1 |
- |
327 |
- |
pepsin |
Sus scrofa |
2.30 |
18.00 |
1psn
 |
1 |
- |
326 |
- |
pepsin |
Homo sapiens |
2.20 |
18.80 |
4cms
 |
-2 |
- |
326 |
- |
chymosin |
Bos taurus |
2.20 |
15.80 |
1lya
 |
1 |
A |
346 |
B |
cathepsin D |
Homo sapiens |
2.50 |
18.80 |
1bbs
 |
-1 |
- |
326 |
- |
renin |
Homo sapiens |
2.80 |
19.60 |
1smr
 |
-2 |
A |
326 |
A |
renin |
Mus musculus |
2.00 |
18.00 |
2jxr
 |
0 |
A |
328 |
I |
proteinase A |
Saccharomyces cerevisiae |
2.40 |
19.30 |
1mpp
 |
-1 |
- |
332 |
- |
pepsin |
Mucor pusillus |
2.10 |
16.20 |
2asi
 |
5 |
- |
361 |
- |
aspartic proteinase |
Rhizomucor miehei |
2.15 |
21.5 |
1am5
 |
1 |
- |
326 |
- |
pepsin |
Gadus morhua |
2.16 |
20.8 |
|
pir |
ali |
malform |
joy-html |
colour postscript |
postscript |
superimposed coordinates
(RasMol)
|
10 20 30 40 50
3app ( 1 ) aasgvatNtPt-anDeeYiTpVtIg--gttLnLnFdTGsADLWVFSteL
4ape ( -2 ) stgsatTtpidslDdaYiTpVqIGtpaqtLnLdFDTGsSDLWVFSseT
2apr ( 1 ) agvGtVpMtDy-gndieYyGqVtIGtpGkkFnLDFdTgsSDLWIAStlÇ
5pep ( 1 ) iGdEpLeNy--ldteYfgtIgIGtpaqdFtViFdTGsSnLWVPSvyÇ
1psn ( 1 ) vdeqpLeNy--ldmeYFgtIgIGtpaqdFtVvFdTGsSNLWVPSvyÇ
4cms ( -2 ) gevAsVpLtny--ldsqYfgkIyLGtppqeFtVLFdTGsSdFWVPSiyÇ
1lyaa ( 1 ) gpipEvLkNy--mdaqYyGeIGIGtppqçFtVvFdTGsSnLWVPSihç
1bbs ( -1 ) ttssViLtNy--mdtqYyGeIgIGtppqtFkVvFdTgsSNVWVPSskÇ
1smra ( -2 ) tdlispvvLtNy--lnsqYygeIgIGtppqtFkViFdTgsANLWVPStkÇ
2jxra ( 0 ) gGhdVpLtNy--lnaQYYtdItLGtppqnFkVILDTGSSNLWVPSneÇ
1mpp ( -1 ) gsvdTpGlYD-fdleeYAIpVsIGtpgqdFyLLFdTgsSDTWVphkgÇ
2asi ( 5 ) gsVdTpGyYD-fdleeYAIpVsIGtpgqdFlLLFdTGsSDTWVphkgÇ
1am5 ( 1 ) rvteqMkNe--adteYyGvIsIGtppesFkVIFdTGsSnLWVSSshÇ
bbbbbbbb bbbbbbbb bbbbbbbb bb
60 70 80 90 100
3app ( 47 ) p--asqqsgHsvYnPsa--tGkelsgytWsisygdgSsAsgnVftdsVtV
4ape ( 46 ) t--asevdgQtiYtPskSttAkllsgAtWsisygdgSsSsgdVytDtVsV
2apr ( 49 ) t---nÇgsgQtkYdpnqSstyqad-grtWsisygdgssAsgiLAkDnVnL
5pep ( 46 ) s--slAÇsdhnqFnPddSstfeat-sqeLsityg-tgsMtGiLGyDtVqV
1psn ( 46 ) s--slAÇtnhnrFnPedSstyqst-setVsityg-tgsMtGiLGyDtVqV
4cms ( 46 ) k--snAÇknhqrFdPrkSstfqnl-gkpLsihyg-tgsMqGiLGyDtVtV
1lyaa ( 47 ) kllDiAÇwihhkYnsdkSstyvkN-gtsFdihyg-sGsLsgyLSqDtVSV
1bbs ( 46 ) srlytAÇvyhklFdasdSssykhn-gteltLrys-tgtVsgfLSqDiItV
1smra ( 46 ) srlylAÇgiHslYessdSssymen-gddFtihyg-sgrVkGfLSqDsVtV
2jxra ( 46 ) g--slAÇflhskYdheaSssykan-gteFaiqYg-tgsLeGyISqDtLsI
1mpp ( 46 ) d-nsegÇvgkrfFdpssSstfket-dynLnityg-tggAngiYFrDsItV
2asi ( 52 ) t-ksegÇvgsrfFdpsaSstfkat-nynLnityg-t gAnGlYFeDsIaI
1am5 ( 46 ) s--aqAÇsnhnkFkPrqSstyvet-gktVdLtyg-tggMrGiLGqDtVsV
333 bbb bbbbbbb bbbbbbbbbbbbb
110 120 130 140 150
3app ( 93 ) ----ggVtAhgQAVQAAqqIs-aqfqqdt-----nnDGlLGLAfssiNtV
4ape ( 92 ) ----ggLtVtgQAVESAkkVs-ssfteds-----tiDGlLGLAfstlNtV
2apr ( 95 ) ----ggllIkgQtIELAkrEa-asfasg------pnDGLLGLGfdtiTtv
5pep ( 92 ) ----GgisDtnQiFGLSetEpgsfLyyA------pFDGiLGLAYpsiSas
1psn ( 92 ) ----GgIsDtnQiFGLSetEpgsfLyyA------pFDGiLGLAYpsiSss
4cms ( 92 ) ----snIvDiqQTVGLStqEpgdvFtya------eFdGILGMAYpslAse
1lyaa ( 95 ) pçq gGvkVerQVFGEAtkQpgitfiaA------kfDGiLGMAYpriSvn
1bbs ( 92 ) ----ggitVt-QmFGEVteMpalpfmla------efdGvVGMGFieqAig
1smra ( 92 ) ----ggitVt-QtFGEVtqLplipfmlA------qfDGvLGMGFpaqAvg
2jxra ( 92 ) ----gdltIpkQdFAEAtsEpgltFafG------kFdGILGLGYdtiSvd
1mpp ( 92 ) ----ggatVkqQTLAYVdnvsg-pTaeQspdselfLDGiFGAAypdnTaM
2asi ( 99 ) ----gditVtkQiLAyVdnVrg-pTaeqspnadifLDGlFGAAypdnTaM
1am5 ( 92 ) ----gggsDpnQeLGESqtEpgpfqaaA------pfdGiLGLAYpsiAaa
bbbbbbbbbbbbb bbbb 333
160 170 180 190 200
3app ( 133 ) qp---qsqtTFFdtVks--sLaqpLFAVALkhq-----qpgvYDFGfids
4ape ( 132 ) sp---tqqkTFFdnAka--sLdspVFTAdLgyh-----apgtYnFGfidt
2apr ( 134 ) r-----gVkTPMdnLisqglIsrpIFGVyLGKakng--ggGeYiFggyds
5pep ( 132 ) g------atPVFdnLwdqglVsqdlFSVyLSsndd---sgSvVlLGgids
1psn ( 132 ) g------atPVFdnIwnqglvsqdlFSVyLSaddq---sgSvVIFGgids
4cms ( 132 ) y------SiPVFdnMmnrhlVaqdlFSVYMdrng----qeSmLtLGaidp
1lyaa ( 146 ) n------VlPVFDnLmqqklVdqniFSFyLsrdpda-qpGGeLmLGgtds
1bbs ( 132 ) r------vtPIFdnIisqgvLkedVFSFYYnrdse lgGqIVLGgsdp
1smra ( 132 ) g------vtPVFdhIlsqgvLkekVFSVYYnrgp--hllGGeVVLGgsdp
2jxra ( 132 ) k------vvPPFynAiqqdlLdekrFAFYLGdtskdtenGGeATFGgide
1mpp ( 131A) eaeygdtYnTVHvNLykqglIsspvFSVyMnTnd----ggGqVvFGgvnn
2asi ( 144 ) eaeygstynTVHvnLykqglIssplFSVyMnTns----gtGeVVFGgvnn
1am5 ( 132 ) g------AvPVFdnMgsqslvekdlFSFyLSggga---ngSEVMlGgvdn
aaaaaaa bbbbb bbbbb 3
210 220 230 240 250
3app ( 173 ) skytgsLtytgVdns---qGfWsFnVdsytAgs--qsg--dgfsGiAdTG
4ape ( 173 ) taytgsitytaVstk---qGfWeWtStGyavgsgtfks--tsIdGIAdTG
2apr ( 177 ) tkFkgslttVpIdns---rGwWgItVdrAtvgt-stVa--ssfdGiLdTG
5pep ( 173 ) syytgslnwVpVsv----egyWQItLdsItMdg-etIaçsggçqAIVdTg
1psn ( 173 ) syytgslnwVpVtv----egyWQItVdsItmng-eaiaçaegçqAIVdTg
4cms ( 173 ) syytgslhwVpVtv----qqyWqFtVdsVtisg-vvvAÇeggçqAILdTg
1lyaa ( 189 ) kyykgslsylnVtr----kAyWQVhLdqVeVas-gltLçkegçeAIVdTg
1bbs ( 173 ) qhyegnfhyinLik----tGvWqIqMkGVsVgs-stlLçedgçlAlVdTG
1smra ( 173 ) qhyqgdfhyvsLsk----tdsWqItMkgVsVgs-stllÇeegçeVvVdTG
2jxra ( 173 ) skfkgditwLpVrr----kayWEVkFeGIGLgd-eyael-eshGAAIDTg
1mpp ( 173 ) tLlggdiqyTdVlksrggyffWdAPVtgVkidgsdavsfdgaqaFtIdTG
2asi ( 190 ) tLlggdiayTdVmsryggyyfWdAPVtgItVdgsaavrfsrpqaFtIdTG
1am5 ( 173 ) shytgsihwIpVta----ekyWqVaLdgItvng-qtaaÇ egçqAIVdTg
33 bbbb bbbb bbbb bbb bbbbb
260 270 280 290 300
3app ( 216 ) ttlLlLddsVVsqYYsqVs-gAqqdsnAggyVFdçs-t-nL-pdFsVsIs
4ape ( 218 ) ttlLyLpatVVsaYWaqVs-gAkssssvggyvFpçs-a-tL-psFtFGVg
2apr ( 221 ) ttlLiLpnniAasVaraY--gAsdng-dgtYtIsçd-tsaf-kpLvFsIn
5pep ( 218 ) tslLTGptsaIanIqsdI--gAsens-dgemvIsçssiasl-pdIvFtIn
1psn ( 218 ) tslLTGptspIanIqsdI--gAsens-dgdmvVsçsaissl-pdIvFtIn
4cms ( 218 ) tskLVGpssdIlnIQqaI--gAtqnq-ygefdIdçdnlsyM-ptVvFeIn
1lyaa ( 234 ) tslMVGpvdeVreLQkaI--gAvpli-qgeymIpÇekvstL-paItLkLg
1bbs ( 218 ) asyIsGstssIekLMeaL--gAkk-r-lfdyvVkÇneGptL-pdIsFhLg
1smra ( 218 ) ssfISAptssLklIMqaL--gAkekr-lheyVvsçsqVptl-pdIsFnLg
2jxra ( 218 ) TSlITLpsglAemINaeI--gAkkgw-tgqytLdçntRdnl-pdLiFnFn
1mpp ( 218 ) tnfFiApssFAekVVkaALpdAtesq--qGYtVpçskyqdskttFsLvLq
2asi ( 240 ) tnfFiMpssaAskIVkaaLpdAtetq--qGwvVpçasyqnskstIsIvMq
1am5 ( 218 ) tskIvApvsalanImkdI--gAsenq gemmgnçasvqsl-pdItFtIn
bbb aaaaaaaaaa bb bbb bbbbb
310 320 330 340 350
3app ( 262 ) -------gytAtVpgslInygpSgdg-stÇlGGIqsNs----gigfSiFG
4ape ( 263 ) -------sarivIpGdyIdfgpistgsssÇfGGIqsSa----giginiFG
2apr ( 266 ) -------gasFqVspdSLvfeef---qgqÇiAGFGyg-----nwgfAiIG
5pep ( 265 ) -------gvqYpLspsAYIlqd----ddsÇtSGFegmdvptssgeLWiLG
1psn ( 264 ) -------gvqYpVppsaYIlqs----egsÇiSGFqgmnlptesgeLWILG
4cms ( 264 ) -------gkmYpLtpsaYTsqd----qgfÇtSgFqse qkWiLG
1lyaa ( 280 ) -------gkgykLspedYTLkvsqagktlÇlSGFmGmdipppsGpLWiLG
1bbs ( 264 ) -------gkeYtLtsadYVfqesysskklÇtLAIhamdippptGpTWaLG
1smra ( 264 ) -------graYtLsStdYVlqr dklçtVALhamdippptGpVWvLG
2jxra ( 264 ) -------gynftIgpydYTlevs----gsÇiSAItpmdfpepvGpLAIVG
1mpp ( 263A) ksgsssdtIdVsVpIskMLlpvdksg-etçmFIVlpd-----ggnqfiVG
2asi ( 288 ) ksgsssdtieisVpVskMLlpvdqsn-etçmFIIlpd-----GgnqyiVG
1am5 ( 264 ) -------gvkQpLppsaYiegd----qafçtSgLgsSgvpsntseLWiFG
bbbbb bbb bbbb bbb bbb
360 370 380
3app ( 300 ) DIFLKsQYVVFdsd-gpqLGFApqa
4ape ( 304 ) DVALKAAFVVFngattptLGFAsk
2apr ( 301 ) DTFLKNNYVVFNqg-vpeVqIApVae
5pep ( 304 ) DVFIRqyYTVFdra-nnkVGLApva
1psn ( 303 ) DVFIRqYFTVFdra-nnqVGLApva
4cms ( 303 ) DvFIreYYSVFDra-nnlVGLAkAi
1lyaa ( 323 ) DVFIGrYYTVFDrd-nnrVGFaeaa
1bbs ( 303 ) ATFIrkfYTeFdrr-nnrIGFalAr
1smra ( 303 ) ATFIRkfYTeFDrh-nnrIGFAlAr
2jxra ( 303 ) DAFLRkYYSIYdig-nnaVGLAkAif
1mpp ( 303 ) NLFLrfFVNVYDfg-knrIGFApLasgyeNd
2asi ( 332 ) NLFLrffVNVYDfg-nnrIGFApLasayeNe
1am5 ( 303 ) DVFLrnYYTIYdrt-nnkVGFApaa
aaaa bbbbbb bbbbbb