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Align your sequence(s)

Papain family cysteine proteinase

class : alpha plus beta number of structures : 13 average size : 223 average PID : 40 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1mem rasmol 1 A 211 A cathepsin K Homo sapiens 1.80 18.3
1icf rasmol 1 A 220 B cathepsin L Homo sapiens 2.00 18.2
8pch rasmol 1 A 212A A cathepsin H Sus scrofa 2.1 N/A
1gec rasmol 1 E 216 E glycyl endopeptidase Carica papaya 2.10 19.6
1ppo rasmol 1 - 216 - papaya proteinase Carica papaya 1.80 15.50
1ppn rasmol 1 - 212 - papain Carica papaya 1.6 15.96
1yal rasmol 1 - 218 - chymopapain Carica papaya 1.70 19.2
1cqd rasmol 3 A 218 A ginger protease II Zingiber officinale 2.10 21.3
2act rasmol 1 - 218 - actinidin Actinida chinensis 1.70 16.50
1aim rasmol 1 - 212 - cruzipain (cruzain) Trypanosoma cruzi 2.0 18.8
1the rasmol 1 A 253 A cathepsin B Rattus norvegicus 1.90 17.0
1huc rasmol 1 A 254 B cathepsin B Homo sapiens 2.1 16.4
1deu rasmol 1 A 242 A cathepsin X [proregion removed] Homo sapiens 1.70 20.4
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Peptidase_C1  
other info key to JOY annotation | show related PDB structures

                            10        20        30        40        50  
1mema   (   1 )    apdsvdYrkk----gyVTpVknQg---qÇgSCWAfSSVgALEGqlkkktg
1icfa1  (   1 )    aprsvdwrek----gyVTpVknqg---qÇgScWAFSATgALEGQmfrktg
8pcha   (   1 )    yppsmdwrkkg---nfVSpVknqg---sÇgScWTFSTTgALESAvAiatg
1gece   (   1 )    lpesvdwrak----gAvTpVkhqg---yÇeSCWAFSTVaTVEGInkiktg
1ppo    (   1 )    lpenVdwrkk----gAVTpVrhqg---sÇgScWAFSAVaTVEGInkirtg
1ppn    (   1 )    ipeyvdwrqk----gAVTpVknqg---sÇgSCWAFSAVvTIEGIIkirtg
1yal    (   1 )    ypqsidwrak----gAVTpVknqg---aÇgS WAFSTIaTVEGiNkivtg
1cqda   (   3 )    lpdsidwren----gAVVpVknQg---gÇgSCWAFSTVaAVEGiNqivtg
2act    (   1 )    lpsyvdwrsa----gAVvdIksQg---eÇgGCWAFSAIaTVEGiNkitsg
1aim    (   1 )    apaaVdwrar----gAVTaVkdqg---qÇgSCWAFSAIgNVECqwflagh
1thea   (   1 )    lpesfdAreqwsnÇptIaqiRdQG---sÇgSCWAFGAVeAMSDRiÇihtn
1huca   (   1 )    lpasfdAreqwpqÇptIkeIRdqG---sÇgScWAFGAVEAISDRiÇIhtn
1deua   (   1 )    lpkswdwrnvd-gvnyaSitrnQhipqyÇgScWAHASTSAMADRInikrk
                       bb                         aaaaaaaaaaaaaaaaa  

                            60        70        80        90        100 
1mema   (  44 )    ---kllnLSPQNLVDÇVs--eNdGçgGGyMtnAFqyVqkn--rGIDse--
1icfa1  (  44 )    ---rlisLSEQNLVDÇSgpqgNeGçngglMdyAFqYVqdn--gGLDse--
8pcha   (  44 )    ---kmlsLAEQQLVDÇAqnFnNhGçqgglPsQAFEYIryn--kGIMGe--
1gece   (  44 )    ---nlveLSEQELVDÇDl--qSyGçnrGyQstSLqyVaq---nGIHlr--
1ppo    (  44 )    ---klveLSEQELVDÇEr--rShGçkgGyppyALeyVak---nGIhlr--
1ppn    (  44 )    ---nlneYSEQELLDÇDr--rSyGçngGypwsALqlVAq---yGIHyr--
1yal    (  44 )    ---nlleLSEQELVDÇDk--hSyGçkgGyQttSLqyVAn---nGVHts--
1cqda   (  46 )    ---dlisLSEQQLVDÇTt--aNhGçrggwMnpAFqfIvnn--gGINse--
2act    (  44 )    ---slisLSEQELIDÇgrtqnTrGçdgGyItdGFqfIind--gGINte--
1aim    (  44 )    ---pltnLSEQMLVSçDk--tDsgçsGGlMnnAFewIvqenngaVyte--
1thea   (  48 )    gr-vnveVSAEDLLTÇÇgiqÇgdgÇnGGypsgAWnFWtr---kGLVsGGv
1huca   (  50 )       vsveVSAeDLLTÇÇgsmÇgdgÇngGypaeAWnfWtr---kGLVsGGl
1deua   (  50 )    gawpsTlLSVQNVIDçGn--Ags-ÇeggnDlsVWdyAhq---hGIPde--
                            aaaaaaa             aaaaaaaaaa           

                            110       120       130       140       150 
1mema   (  84 )    -----daypyvg---q---------------eesçmyn-pt---------
1icfa1  (  87 )    -----esYpyea---t---------------eesçkyn-pk---------
8pcha   (  84 )    -----dtYpykg---q---------------ddhçkfq-pd---------
1gece   (  84 )    -----akYpyia---k---------------qqtçranqvg---------
1ppo    (  84 )    -----skYpyka---k---------------qgtçrAkqvg---------
1ppn    (  84 )    -----ntYpyeg---v---------------qryçrsrekg---------
1yal    (  84 )    -----kvYpyqa---k---------------qykçratdkp---------
1cqda   (  87 )    -----etYpyrg---q---------------dgiçnstvn----------
2act    (  87 )    -----enYpyta---q---------------dgdçdvalqd---------
1aim    (  84 )    -----dsypyaSgegi---------------sppçttsgh----------
1thea   (  94 )    ynshigÇlPYtippÇEhhvngarppçtgegdtpkçnk---mÇea----gy
1huca   (  94 )    yeshvgÇrpYsippÇEhhvngsrppçtgegdtpkçsk---iÇep----gy
1deua   (  92 )    -----nnyqAk------------------dqeçdkfnqÇGtçnefk
                                                                     

                            160       170       180       190       200 
1mema   ( 101 )    ------gkaakCrgyreIpegnekaLkraVarvGPVSVaIDAsltsFqfY
1icfa1  ( 104 )    ------ysvAnDtgfvdIpk-qekaLmkaVAtvGPISVaIdAghesFlfy
8pcha   ( 102A)    ------kAiAfVkdVanitmndeeaMveAVAlyNPVSFaFeV-tndFlmy
1gece   ( 102 )    ------gpkvkTngvgrvqsnnegsLlnaIAh-qPVSVVVEsagrdFqny
1ppo    ( 102 )    ------gpivkTsgvgrvqpnnegnLlnaIAk-QPVSVvVEskgrpFqlY
1ppn    ( 102 )    ------pyaakTdgvrqVqpynegaLlysIAn-qPVSVvLeAagkdFqlY
1yal    ( 102 )    ------gpkvkItgykrVpsn etsFLgaLan-qPLSVlVeAggkpFqlY
1cqda   ( 104 )    ------apvVsIdsyenVpshneqsLqkaVAn-qPVSVTMdAagrdFqly
2act    ( 105 )    ------qkyVtIdtyenVpynnEwaLqtaVty-qPVSVaLdAagdaFkqy
1aim    ( 101 )    ------tvgAtItghveLpq-deaqIAawLAvnGPVAVAVDAs--sWmtY
1thea   ( 137 )    stsykedk-hyGytsysvsd-sekeImaeIyknGPVEGaFtV-fsdFlty
1huca   ( 137 )    sptykqdk-hyGynsysvsn-sekdImaeIyknGPVEGaFsv-ysdFllY
1deua   ( 119 )    hairnytl-wrVgdygsls--grekMMaeIyanGPISÇGIma-terLany
                                bbbb     aaaaaaaaaa   bbbbb    aaaa  

                            210       220       230       240       250 
1mema   ( 145 )    skgVyydesÇns--dnlnHaVLAVGYgiqk--gnkhWIIkNswgenwGnk
1icfa1  ( 147 )    kegiyfepdÇss--edmdHGVLVVGYGfest nnkyWLVkNswgeewGmg
8pcha   ( 145 )    rkgiysstsÇhktpdkvnhAVLAVGYgee-n-gipyWiVkNswgpqwGmn
1gece   ( 145 )    kggifeG-sçgt---kvdHaVTAVGYGksg--gkgyILIkNswGpgWGen
1ppo    ( 145 )    kggifeG-pçgt---kvdHAVTAVGYGksg--gkgyIlIKNswgtawGek
1ppn    ( 145 )    rggifvG-pçgn---kvdHAVAAVGYGp------nyILIKNswgtgwGen
1yal    ( 145 )    ksgVfdG-pçgt---kldHAVTAVGYGtsd--gknyIIIKNswGpnwGek
1cqda   ( 147 )    rsgIFtg-sçni---sAnHALTVVGYgten--dkdfWiVkNswgknwGes
2act    ( 148 )    asgiftG-pçgt---avdHAIVIVGYGteg--gvdyWIVKNswdttwGee
1aim    ( 145 )    tggvmt--sÇvse--aldHGVLLVGYnds-a-avpyWIIkNswttqwGee
1thea   ( 184 )    ksgVykheagd---vmggHAIRILGWGien--gvpyWlVANSWnadWGdn
1huca   ( 184 )    ksgVYqhvtge---mmggHAIRILGWGven--gtpyWlVANSwntdWGdn
1deua   ( 165 )    tggiYaeyqdt---tyinHvVSVAGWgisd--gteyWIVRNswgepwGer
                      bb             bbbbbbbbbbb    bbbbbbb          

                            260       270       280  
1mema   ( 185 )    GyIlMARnk----n---naÇGIAnlASfPkm   
1icfa1  ( 197 )    GyVkMAKdr----r---nhÇGIAsaASyPtv   
8pcha   ( 185 )    GyFlIerg-----k---nmÇGLAAcASyPip-lv
1gece   ( 189 )    GyIrIrras----gnspGvÇGVYrSSyyPikn  
1ppo    ( 189 )    GyIrIkrap----gnspGvÇGLYksSyyPtkn  
1ppn    ( 185 )    GyIrIkrgt----gnsyGvÇGLYtsSfyPvkn  
1yal    ( 189 )    GyMrLkrqs----gnsqGtÇGVYksSyyPfKgfa
1cqda   ( 191 )    GyIrAeRni----enpdGkÇGITrfASyPvkk  
2act    ( 192 )    GyMrIlRnv----g-gaGtÇGIAtmPSyPvky  
1aim    ( 185 )    GyIrIakg--------snqÇlVkeeASSAvvg  
1thea   ( 229 )    GfFkIlrge--------nhcgIEseIvAGiPrt 
1huca   ( 229 )    GfFkIlrgq--------dhcgIEseVvAGiprtd
1deua   ( 210 )    GWLrIVTstykdgkGaryNLAIeehÇTfGdPiv 
                    bbbbb            333     bbbb    


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