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Align your sequence(s)

Class II histocompatibility antigen, beta chain

class : multi domain number of structures : 4 average size : 192 average PID : 46 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1fng rasmol 6N B 188 B H-2 class II histocompatibility antigen, E-k beta chain Mus musculus 1.90 22.1
1fv1 rasmol 1 B 190 B Major histocompatibility complex beta chain Homo sapiens 1.90 23.3
1iak rasmol 5 B 190 B H-2 class II histocompatibility antigen, A-k beta chain Mus musculus 1.90 21.4
1hdm rasmol 3 B 185 B class II histocompatibility antigen, M beta chain Homo sapiens 2.50 19.7
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : ig  MHC_II_beta  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1fngb  (   6N)    kkvitafneglkggggslvgggsggggsrpwfleyCkseçhfyngtqrVr
1fv1b  (   1 )                             gdtrprflqqdkyeçhffngterVr
1iakb  (   5 )                             g----sfvhqfqpfçyftngtqrIr
1hdmb  (   3 )                                   fvahvestçlLddagtpkd
                                                   bbbbbbbbb     bbb

                           60        70        80        90        100 
1fngb  (  26 )    LlVrYfynleeNLrFdsdvgeFrAvtelGrpdaenWnsqpefLeqKraEv
1fv1b  (  26 )    FLhrdiynqeeDLrFdsdvgeYrAvtelGrpdaeywnsqkdfledrraav
1iakb  (  26 )    LViryiynreeyVrFdsdvgeYravtelGrpdaeywnkq--ylerTrael
1hdmb  (  22 )    ftYçisfnkdllTçWdpeenkMapcnslAnvlSqhlnqkdtlmqrL-nGl
                  bbbbbbb  bbbbbbb     bbb  333aaaaaaaa  aaaaaaaa aa

                           110       120       130       140       150 
1fngb  (  76 )    dtVÇrhnye-ifdnflvprrvePtVtVyptktqplehhnlLVÇsVsdFyp
1fv1b  (  76 )    dtyÇrhnyg-vgesftvqrrvePkVtVypartqtlqhhnlLVÇsVngFyp
1iakb  (  76 )    dtvÇrhnyektetptslrrleqPsVvIslsrtealnhhNtLvÇsVtdFyp
1hdmb  (  71 )    q-nÇathtq-pfwgsltnrtrpPsVqVakttpfnTrepvmLAÇyVwgFyp
                  aa aaaaaa              bbbbbb         bbbbbbbbbb  

                           160       170       180       190       200 
1fngb  ( 125 )    gnieVrWfrngkeektgivstglvrngdwtFqTlvmLetvpqsgevYtÇq
1fv1b  ( 125 )    gsieVrWfrnsqeekagvvstgliqngdwtfqTlVmLeTvprsgevYtÇq
1iakb  ( 125 )    akikVrWfrngqeetvgvsstqlirngdwtFqvlVmLeMtPrrgevYtÇh
1hdmb  ( 119 )    aeVtItWrkngklvmhssahktAqpngdwtyqtlshLaltpsygdtYtÇV
                     bbbbbb  bb    bbb   bb     bbbbbbbbb       bbbb

                           210     
1fngb  ( 175 )    VeHpSltdpvtvew   
1fv1b  ( 175 )    VeHpSvtspltvewra 
1iakb  ( 175 )    VeHpSltspitvewra 
1hdmb  ( 169 )    VeHiGapepilrdwtPg
                  bb       bbbbb   


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