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Align your sequence(s)

Class II histocompatibility antigen, N-terminal domain

class : alpha plus beta number of structures : 13 average size : 83 average PID : 31 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1fv1 rasmol 1 B 92 B Major histocompatibility complex beta chain Homo sapiens 1.90 23.3
1d5z rasmol 1 B 92 B HLA class II histocompatibility antigen, Dr-4 beta chain Homo sapiens 2.00 23.4
1a6a rasmol 5 B 92 B HLA class II histocompatibility antigen, Dr-1 beta chain Homo sapiens 2.75 24.6
1fng rasmol 6 B 88 B H-2 class II histocompatibility antigen, E-k beta chain Mus musculus 1.90 22.1
1es0 rasmol 5 B 93 B H-2 class II histocompatibility antigen, A beta chain Mus musculus 2.60 21
1iak rasmol 5 B 92 B H-2 class II histocompatibility antigen, A-k beta chain Mus musculus 1.90 21.4
2iad rasmol 5 B 93 B H-2 class II histocompatibility antigen, A-d beta chain Mus musculus 2.4 25.3
1hdm rasmol 3 B 87 B class II histocompatibility antigen, M beta chain Homo sapiens 2.50 19.7
2iad rasmol 27 A 82 A H-2 class II histocompatibility antigen, A-d alpha chain Mus musculus 2.4 25.3
1iak rasmol 1 A 81 A H-2 class II histocompatibility antigen, A-k alpha chain Mus musculus 1.90 21.4
1fng rasmol 1 A 82 A H-2 class II histocompatibility antigen, E-k alpha chain Mus musculus 1.90 22.1
1fv1 rasmol 3 A 81 A HLA class II histocompatibility antigen, Dr alpha chain Homo sapiens 1.90 23.3
1hdm rasmol 13 A 93 A class II histocompatibility antigen, M alpha chain Homo sapiens 2.50 19.7
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : MHC_II_beta  MHC_II_alpha  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1fv1b  (   1 )    gdtrprflqqd-kyeçhffngterVrFLhrdiynqeeDLrFdsdvgeYrA
1d5zb  (   1 )    gdtrprfleqv-kheçhffngterVrFLDryfyhqeeyVrFdsdvgeYra
1a6ab  (   5 )        prfleys-tseçhffngterVrYlDryfhnqeenVrFdsdvgeFra
1fngb  (   6 )         wfleyc-kseçhfyngtqrVrLlVryfynleenLrFdsdvgeFrA
1es0b  (   5 )        rhfvhqf-kgeçyftngtqrIrLVTryiynreeyLrFdsdvgeYra
1iakb  (   5 )        gsfvhqf-qpfçyftngtqrIrLViryiynreeyVrFdsdvgeYra
2iadb  (   5 )        rhfvvqf-kgeçyytngtqrIrLVTryiynreeyVrYdsdvgeYra
1hdmb  (   3 )          fvahv-estçlLddagtpkdftYçisfnkdllTçWdpeenkMap
2iada  (  27 )                                     dgdelfyvdldkkktvw
1iaka  (   1 )      ieadhvGsyGitvYqsp----gdiGqYtfefdgdelFyVdldkketvw
1fnga  (   1 )      ikeehtiiq-aefyllp----dkrGeFmfdfdgdeiFhVdieksetiw
1fv1a  (   3 )        eehviiq-aefylnp----dqsGeFmfdfdgdeiFhVdmakketvw
1hdma  (  13 )       lqnhtflh-tvyÇqdg----spsvgLsEaydedqlfffdfsqntRvp
                          bbb bbbbb        bbbbbbbb  bbbbbbb     bbb

                           60        70        80        90     
1fv1b  (  50 )    vtelGrpdaeywnsqkdfledrraavdtyÇrhnygvge-sftvq  
1d5zb  (  50 )    vtelGrpdaeywnsqkdlLeqkraavdtyÇrhnygvge-sftvq  
1a6ab  (  50 )    vtelGrpdAeywnsqkdlLeqkrgrvdnyÇrhnygvve-sftvq  
1fngb  (  50 )    vtelGrpdaenwnsqpefLeqkraevdtvÇrhnyeifdn       
1es0b  (  50 )    vtelGrhsaeyynkq--ylerTraeldtaÇrhnyeetevptslr  
1iakb  (  50 )    vtelGrpdaeywnkq--ylerTraeldtvÇrhnyektetptslr  
2iadb  (  50 )    vtelGrpdaeywnsqpeilerTraevdtaçrhnyegpetstslr  
1hdmb  (  46 )    cnslAnvlSqhlnqkdtlmqrL-nGlq-nÇathtqpfwgsltnr  
2iada  (  44 )    rlpefgqlilfe------pqgglqnia-aekhnlgiltkrsnftpa
1iaka  (  44 )    mlpefaqlrrfe------pqgGlqnia-tgkhnleiltkrsnstp 
1fnga  (  44 )    rleefakfasfe------aqgAlania-vdkanldvmkersnntpd
1fv1a  (  44 )    rleefgrfasfe------aqgAlania-vdkanleimtkrsnytp 
1hdma  (  55 )    rlpefadwAqeq------gdailfdke-fçewmiqqipkldgkipv
                    333             aaaaa aaa  aaaaaaa          


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