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Align your sequence(s)

NADH ubiquinone oxidoreductase, 20 Kd subunit

class : multi domain number of structures : 5 average size : 265 average PID : 57 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1frf rasmol 4 S 264 S periplasmic [NiFe] hydrogenase small subunit Desulfovibrio fructosovorans 2.7 22
2frv rasmol 4 A 264 A periplasmic [NiFe] hydrogenase small subunit Desulfovibrio gigas 2.54 20.1
1e3d rasmol 5 A 266 A [NiFe] Hydrogenase small subunit Desulfovibrio desulfuricans 1.8 N/A
1h2r rasmol 1 S 267 S periplasmic [NiFe] hydrogenase small subunit Desulfovibrio vulgaris 1.40 21.8
1cc1 rasmol 6 S 283 S periplasmic [nifese] hydrogenase small subunit Desulfovibrio baculatus 2.15 19.4
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : oxidored_q6  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1frfs  (   4 )       khrpsVVWLHNaectgCTeaAirTikpyidaLildtIsldYQetima
2frva  (   4 )    k---krpsVVYLHNaectgCSesVlrTvdpyvdeLildvIsmdYHetlma
1e3da  (   5 )        srpsVVYLHAaectgCSeallrTyqpfidtLildtIsldYHetima
1h2rs  (   1 )    lmgprrpSVVYLHNaectgCSesvlrAfepyidtlildtlslDYHetima
1cc1s  (   6 )        kkAPVIWVqGqGctgCsvSllnAvhprikeIlldvIslefHptvma
                         bbbbbb     aaaaaaa      aaaaaa   bbbb      

                           60        70        80        90        100 
1frfs  (  51 )    aagetseaalheaLegk-dgYyLVVEGGLPtidgGqwgmvag-------h
2frva  (  51 )    gaghaveealheaIkg---dFvCVIEGGIPmgdgGywgkvgg-------r
1e3da  (  51 )    aageaaeealqaaVngp-dgFIClVEGAIPtgmdnkygyiag-------h
1h2rs  (  51 )    aagdaaeaaleqAVnsp-hgFiAVVEGGIPtaanGiygkvan-------h
1cc1s  (  52 )    segemalahMyeiAekfngnFFLLVEGAIPtakeGrycivgeakahhhev
                    aaaaaaaaaaaa       bbbbb  bb  333   bb         b

                           110       120       130       140       150 
1frfs  (  93 )    pmietCkkAAakAkgiICIGTCSpyGGvqkakpnpsqAkGVseAL---g-
2frva  (  91 )    nmydiCaeVApkAkavIAIGTCATyGGvqaakpnptgTvGVneALgklg-
1e3da  (  93 )    tmydiCknILpkAkaVVSIGTCACyGGiqaakpnptaAkGIndCYadlg-
1h2rs  (  93 )    tmldICsrILpkAqavIAYGTCATfGGvqaakpnptgAkGVndALkhlg-
1cc1s  ( 105 )    tMmeLIrdLApkSlATVAVGTCSAYGGipaaegnvtgSkSVrdFFadeki
                  baaaaaaaa333  bbbbb aaaaa  333       bb aaaaa     

                           160       170       180       190       200 
1frfs  ( 139 )    -vkTInIPGcpPNpiNFvgAVvhVLt-k------giPdldengRPklfYg
2frva  ( 140 )    -VkAINIAGcpPNpmNfVgTVvhllt-k------gmPeldkqgRPvmfFg
1e3da  ( 142 )    -VkAiNVPGcpPNplNMVgTLvAflk-g------qkIeldevgRPvmfFg
1h2rs  ( 142 )    -VkAiNIAGcpPNpyNlvgTivyylknk------aaPeldslnRPtmfFg
1cc1s  ( 155 )    ekllVNVPGcpPHpdWMvgTlvaawshvlnptehplpeldddgRPllfFg
                      bbb      aaaaaaaaaaaa                    aaaa 

                           210       220       230       240       250 
1frfs  ( 181 )    elVhdnCprlphfeasefApsfdseeakkgfCLyelGCkGpvTyNnCPkv
2frva  ( 182 )    etVhdnCprlkhfeagefAtsfgspeakkgyCLyelGCkGpdTyNnCPkq
1e3da  ( 184 )    qsVhdlCerrkhfdagefApsfnseearkgwCLydvGCKGpeTyNNCPkv
1h2rs  ( 185 )    qtVheqCprlphfdagefApsfeseearkgwCLyelGCkGpvTmNnCPki
1cc1s  ( 205 )    dNIhenCpyldkydnsefAetftk-----pgCKaelGCKGpsTyADCAkr
                           aaaaa          aaaa     333   333    aaaa

                           260       270       280   
1frfs  ( 231 )    lfnq-vnWpVqaghPClGCSepdFwdtMtpfyeqg
2frva  ( 232 )    lfnq-vnWpVqaghPCiACSepnFwdlyspfysa 
1e3da  ( 234 )    lfne-tnWpVaaghPCiGCSepnFwddMtpfyqn 
1h2rs  ( 235 )    kfnq-tnWpVdaghPCiGCSepdFwdamtpfyqn 
1cc1s  ( 250 )    rwnnginWcVen-aVCiGCVepdFpdgKspfyvae
                           333           aaaa        


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