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Align your sequence(s)

Ribosome inactivating protein

class : alpha plus beta number of structures : 7 average size : 254 average PID : 38 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1apa rasmol 6 - 266 - antiviral protein alpha Phytolacca americana 2.30 17.2
1qci rasmol 1 A 262 A antiviral protein C Phytolacca americana 2.00 23
1abr rasmol 1 A 251 A abrin-A Abrus precatorius 2.14 18.9
1fmp rasmol 1 - 267 - ricin Ricinus communis 2.80 20.90
1mrj rasmol 1 - 247 - alpha-trichosanthin Cucurbitaceae trichosanthes 1.60 17.3
1mrg rasmol 1 - 246 - momordin I Momordica charantia 1.8 19.5
1cf5 rasmol 1 A 249 A rmomordin II Momordica balsamina 2.55 17.2
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : RIP  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1apa   (   6 )         intitFdVGnAtinkYatFMksIhnqAkdptlygIpMLPntnl
1qcia  (   1 )         vntiiYnVgsTtiskYatFLndLrneAkdpslYgIpMLPntnt
1abra  (   1 )        edrpikFstegAtsqsYkqFIeaLrerLr-g-glihdipVLpdptt
1fmp   (   1 )    ifpkqYpiinFtTAgAtvqsYtnFIraVrgrLttgadvRheIpVLpnrvg
1mrj   (   1 )           dvsFrLsgAtsssYgvFIsnLrkaLp-nerklydipLLrs--s
1mrg   (   1 )           dvsFrLsgAdprsYgmFIkdLrnaLp-frekVynIplLlp--s
1cf5a  (   1 )           dVnFdLstAtaktYtkFIedFratLp-fshkVydipLLys--t
                          bbbb     aaaaaaaaaaaaaa      bb  bb       

                           60        70        80        90        100 
1apa   (  51 )    t---pkyLlVtLqdsslktItLMLkRnnLyVMGYaDtyn-gRyHIFkd
1qcia  (  46 )    n---pkyVlVeLqGsnkktItLMLrRnnLyVMGYSDpfetnRyHIFnd
1abra  (  45 )    lqernrYItVeLsNsdtesIeVGIDVtnAyVVAYrAg-----tqSyfLrd
1fmp   (  51 )    lpinqrFIlVeLsNhaelsVtLALDVTnAyVvGYrAg-----nSAYFFhp
1mrj   (  41 )    LpGsqrYalIhLTNyadetIsVAIdVTnVyIMGYrAg-----dTSYFFne
1mrg   (  41 )    vsgagrYllMhLfnrdgktItVAVDVTnIyIMGYlAd-----ttSYFFne
1cf5a  (  41 )    isdsrrFilLNLTSyayetIsVAIDVtnVyVVAYrTr-----dvSyFFke
                        bbbbbbb     bbbbbbb     bbbbbb       bbbb   

                           110       120       130       140       150 
1apa   (  97 )    isntterndVmttLÇpnpssrvgknInYdssypaLekkVgr-pRsqVqLG
1qcia  (  93 )    Isg-terqdVettLÇpnansrvsknInFdsryptLeskAgvksRsqvqLG
1abra  (  90 )    -----ApssAsdyLFt--gT-dqhsLpFyGtygdLerwAhq-srqqIpLG
1fmp   (  96 )    d--nqedaeAIthLFt--dVqnrytfafGGnYdrLeqlAgn-lrenIeLG
1mrj   (  86 )    ----asAteAAkyvFk--dAmrkvtLpYsGnyerLqtaAgk-irenIpLG
1mrg   (  86 )    ----paAelASqyvFr--darrkitLpYsGdyerLqiaAgk-pRekipIG
1cf5a  (  86 )    -----sppeAynilfk--gt-rkitLpYtgnyenLqtaAhk-iRenidLG
                      aaaaaaa          bbbb      aaaaaaaa    333    

                           160       170       180       190       200 
1apa   ( 146 )    iqiLnsgIgkIygvd--sftektEAeFLLVAiQMVSEAARFkyIEnqVkt
1qcia  ( 142 )    iqiLdsnIgkISgvm--sftektEAeFLLVAiQMVSEAARFkyIEnqVkt
1abra  ( 131 )    lqaLthGIsfFrsg---gndneeKArTLIVIiQMVAEAARFryISnrVrv
1fmp   ( 141 )    ngPLeeAIsaLyyyStggtqlptLArSFIiCIQMISEAARFqyIEgeMrt
1mrj   ( 129 )    LpaLdsAIttLfyy-----nansAAsaLMvLIQSTSEAARYkfIeqqIgk
1mrg   ( 129 )    LpaLdsAIstLlhy-----dstaAAgaLLVLIQTTAEAARFkyIEqqIqe
1cf5a  ( 127 )    LpaLSsAIttLfyy-----naqsAPsaLLvLiQTTAEAArFkyIErhVak
                  aaaaaaaaaaa         aaaaaaaaaaaaaa aaaaa aaaaaaaaa

                           210       220       230       240       250 
1apa   ( 194 )    nF--nrafyPnakVlnLEeSWgkIStaIHnAk--ngaLtspleLknangs
1qcia  ( 190 )    nf--nrafnPnpkVlnLQetWgkIStaIHdAk--ngvLpkpleLvdasga
1abra  ( 178 )    SIqtgtafqPdaaMislEnnWdnLSrgVQeSv--qdtFpnqVtLtnirne
1fmp   ( 191 )    RirynrrsaPdpSVitlEnSWgrLStaIQeSn--qgAFaspiqLqrrngs
1mrj   ( 174 )    rv--dktflPslaIislEnswsaLSkqIQiAstnngqFespvvLinaqnq
1mrg   ( 174 )    RA--yrdevPslATisLEnswsgLSkQIqlAqgnnGiFrtpivLvdnkgn
1cf5a  ( 172 )    yv--atnfkPnlaIisLEnqWsaLSKQIflAqnqggkFrnpVdLikptgq
                             aaaaaaaaaaaaaaaaaaa      bbbbbbbbb     

                           260       270       280 
1apa   ( 240 )    kwiVlrvd--dIepdVgLLkyvng--tçqat
1qcia  ( 236 )    kwiVlrvd--eIkpdVaLLnyvgg--sçqtt
1abra  ( 226 )    pviVdslshptva-vLaLMlfvcnpp----n
1fmp   ( 239 )    kfsVydvs--iLipiIaLMvyrcapppssqf
1mrj   ( 222 )    rvtitnvdagvVtsnIaLLlnrnnma     
1mrg   ( 222 )    rvqitnvtskVVtsnIqLLlntrni      
1cf5a  ( 220 )    rfqVtnvdsdvVkgnIkLLLNsraSta-den
                  bbbbbb    aa                   


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