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Align your sequence(s)

DNA polymerase processivity factor

class : alpha plus beta number of structures : 4 average size : 114 average PID : 33 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1czd rasmol 1001 A 1110 A processivity clamp gp45 Bacteriophage t4 2.45 23.2
1b77 rasmol 1 A 110 A A sliding clamp complexed with an interaction peptide from DNA polymerase Bacteriophage rb69 2.10 22.5
1czd rasmol 1111 A 1228 A processivity clamp gp45 Bacteriophage t4 2.45 23.2
1b77 rasmol 111 A 228 A A sliding clamp complexed with an interaction peptide from DNA polymerase Bacteriophage rb69 2.10 22.5
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : DNA_PPF  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                            10        20        30        40        50  
1czda1  (1001 )         mkLskdTtalLknFAt--insgImLks---gqfImTrav----ng
1b77a1  (   1 )         MkLskdTiaiLknFAs--insGIlLsq---gkfImTrav----ng
1czda2  (1111 )    vasavteIkaedLqqLlrvsrglqIdTIAItvkegkIvINGFnkvedsal
1b77a2  ( 111 )    vasviTeIkaedLqqLlrvSrglqIdtIAItnkdgkIvInGYnkveDsgl
                            aaaaaaaaaaaa      bbb     bbbbbbb        

                            60        70        80        90        100 
1czda1  (1037 )    ttyaeanIsdvId----fdvAIydLngFLgilslVnddaeIsqS--ed-g
1b77a1  (  37 )    ttyaeanIsdeId----fdvALydLnsFLsilslVsddaeIsmh--td-g
1czda2  (1161 )    trvkysltLgdydgentFnFIIn--manMkMq---pgnYkLlLwAkgkqg
1b77a2  ( 161 )    trpkysltLtdydgsnnFnFVIn--manMkIq---pgnYkVmLwGagdkv
                       bbbbbbb        bbb                 bbbb       

                            110       120       130 
1czda1  (1080 )    nIkIadarstifwpaadpstVvapnkpipfp
1b77a1  (  80 )    nIkIadtrstvywpaadkstIvfpnkpiqfp
1czda2  (1206 )    aAkFeGehanyvvaLea--dsthdf      
1b77a2  ( 206 )    aAkFessqvsyviaMea--dSthdf      
                    bbbb    bbbb                  


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