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Align your sequence(s)

DNA-binding homeodomain

class : all alpha number of structures : 8 average size : 63 average PID : 35 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1ftz rasmol -1 - 68 - fushi tarazu homeodomain Drosophila melanogaster N/A N/A
1hom rasmol 0 - 67 - antennapedia homeodomain Drosophila melanogaster N/A N/A
2hdd rasmol 5 A 59 A segmentation polarity protein engrailed Drosophila melanogaster 1.9 20.5
1ftt rasmol 0 - 67 - thyroid transcription factor 1 homeodomain Rattus norvegicus N/A N/A
1nk3 rasmol 108 P 170 P vnd/nk-2 homeodomain Drosophila melanogaster N/A N/A
1akh rasmol 77 A 125 A mating-type protein A-1 Saccharomyces cerevisiae 2.5 20.1
1b8i rasmol 205 B 259 B homeobox protein extradenticle Drosophila melanogaster 2.40 22.4
1lfb rasmol 13 - 89 - transcription factor LFB homeodomain Rattus rattus 2.80 21.20
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : homeobox  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1ftz   (  -1 )    mdskrtrqtytryQtleLekEfhfn---ryItrrrridIanaLs------
1hom   (   0 )    m-rkrgrqtytryqtleLekeFhfn---ryLtrrrrieIahaLc------
2hdda  (   5 )          rtafsseqlarLkrefnen---rylterrrqqLsseLg------
1ftt   (   0 )    mrrkr-rvlfsqaqvyeLerrfkqq---kyLsaperehLAsmih------
1nk3p  ( 108 )    kkrkr-rvlftkaqtyeLerrfrqq---ryLsaperehlAslir------
1akha  (  77 )             ispqArafLeevfrrk---qsLnskekeevAkkCg------
1b8ib  ( 205 )          rrnfskqAseiLneyFyshlsnpyPseeakeelarkCg------
1lfb   (  13 )          rfkwgpaSqqiLfqayerq---knPskeeretlveeCnraeCiq
                             aaaaaaaaaaaaa        aaaaaaaaaaa       

                           60        70        80        90       
1ftz   (  40 )    ---------------LserQIkiwFqnrrmkskkdr----tldsspeh
1hom   (  40 )    ---------------LterqIkiwfqnrrmkwkkenktkgepg     
2hdda  (  40 )    ---------------lneaqIkiwFknkrakikks             
1ftt   (  40 )    ---------------ltptqVkiWFqnhrykmkrqakdkaaqq     
1nk3p  ( 148 )    ---------------ltptqVkiwFqnhryktkraqne          
1akha  ( 109 )    ---------------itplqVrvwFinkrmrs                
1b8ib  ( 240 )    ---------------itvsqVsnwFgnkrirykkn             
1lfb   (  54 )    rgvspsqaqgLgsnlVtevrVynWFanrrkeeafrh            
                                   aaaaaaaaaaaaa                  


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