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Align your sequence(s)

Ligand-binding domain of nuclear hormone receptors

class : all alpha number of structures : 5 average size : 248 average PID : 22 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1lbd rasmol 225 - 462 - retinoic acid receptor alpha Homo sapiens 2.7 23
2lbd rasmol 182 - 419 - retinoic acid receptor gamma-2 Homo sapiens 2.0 21
1prg rasmol 207 A 476 A peroxisome proliferator activated receptor gamma Homo sapiens 2.2 24.6
3ert rasmol 306 A 551 A estrogen receptor Homo sapiens 1.90 22.9
1a28 rasmol 682 A 932 A progesterone receptor Homo sapiens 1.8 19.05
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : hormone_rec  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1lbd   ( 225 )       sanedMpverIleAElavepk------------------------te
2lbd   ( 182 )      lspqleelitkVSkAHqeTFp-slcqlg-----------kyttn----
1prga  ( 207 )      esadlralAkhLydsYikSFpltkakAraiLtgkttdkspfvIydmns
3erta  ( 306 )    lalsltadqMvsaLldAepp---------------------ilySeydp-
1a28a  ( 682 )        qlipplInlLmsiepd---------------------viyAgHdn-
                          aaaaaaaaa                                 

                           60        70        80        90        100 
1lbd   ( 248 )    tyveanmglnpsspn----------dpvtnicqAadkqlftLveWAkrIP
2lbd   ( 214 )    -----------ssadhrvq---LdlgLwdkfseLatkciikIveFAkrLp
1prga  ( 255 )    lmmGedkikfkhitplqeqskevAiRifqgcqfrsveavqeIteYAksIp
3erta  ( 334 )    ------trpfs------------easmmglltnLadrelvhMInWAkrVp
1a28a  ( 706 )    ------tkpdt------------sssLltslnqLgerqLlsvvkWSksLp
                                            aaaaaaaaaaaaaaaaaaaaa   

                           110       120       130       140       150 
1lbd   ( 288 )    hFseLpldDqviLlragwneLlIAsFShrSia-vk---dGIlLatG-lhV
2lbd   ( 250 )    gFtgLsiaDqitLlkaACldIlMLRiCtR----ytpeqdtMTfsdG-LtL
1prga  ( 305 )    gFvnldlnDqvtLlkyGVHEIIYTmlAsl----Mnk--dGvLiseGqGfm
3erta  ( 366 )    GFvdLtlhdqVhLLecAwlEIlMIglVwrSme--hp-gkLlFA--pnLlL
1a28a  ( 738 )    gFrnLhidDqitLiqYsWmsLmVFgLGwrSykhvsG-qmLyfA--pdLiL
                   333  aaaaaaaaaaaaaaaaaaaaaa           bbb      bb

                           160       170       180       190       200 
1lbd   ( 333 )    hrnsAhsa--gvgaIFdrVlteLvsKmrdMqMdkTELGCLRAIVLFnpds
2lbd   ( 295 )    nrtQMhNA--GfGplTdlVFafAgqll-pLeMddtEtGLLSAICLIcGdr
1prga  ( 349 )    treFLkslrkpFgdfmepKFeFAvkFn-aleLdDsDLAIFIAVIILsGdR
3erta  ( 411 )    drnqGkcV-egMveiFdmLlatSsrFr-mmnLqgeEFVCLKSiILLnSGV
1a28a  ( 785 )    neqrMk-e-ssFyslCltmwqIPqeFv-klqVsqeEFLCMkVLLLLNtIp
                  baaaa          aaaaaaaaaaa       aaaaaaaaaaaa     

                           210       220       230       240       250 
1lbd   ( 381 )    k--------gLsnpaeVeaLrekVyaSLeayCkhkypeq---pgRfakLl
2lbd   ( 342 )    m--------dLeepekVdklqepLleALrlyArrrrp---sqpyMfprMl
1prga  ( 398 )    p--------gLlnvkpIediqdnLlqALelQLklnhp---essqLfakLl
3erta  ( 459 )    ytFlsstlksleekdhIhrVldkItdTLihlMakagltlqqqhqrlaqLl
1a28a  ( 832 )    l-------egLrsqtqFeemrssYirELikAIglrqkgvvsssqrfyqLT
                               aaaaaaaaaaaaaaaaaaaa           aaaaaa

                           260       270       280       290       300 
1lbd   ( 420 )    lrlpaLrsIGlkClehlFff------------kLiGdtpidtflmemlea
2lbd   ( 381 )    mkitdLrgiStkgaeraitLkmeIp---gpMppliremlenp        
1prga  ( 437 )    qkmtdLrqIvtehvqllqvIkktetd--mslhplLqeiykdl        
3erta  ( 509 )    lIlshIrhMSnkgmehlysmkc----knvv---plydlLlemLd------
1a28a  ( 875 )    klLdnLhdlVkqLHlyclntfiqsralsVeFpemmsevIaaqLpkilagm
                  a aaaaaaaaaaaaaaaaaa            aaaaaa            

                          
1lbd   ( 458 )    ph---qmt
2lbd                      
1prga                     
3erta  ( 546 )    --ahrlha
1a28a  ( 925 )    Vkpllfhk
                          


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