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Align your sequence(s)

Class II histocompatibility antigen, C-terminal domain

class : all beta number of structures : 8 average size : 99 average PID : 39 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1fng rasmol 83 A 182 A H-2 class II histocompatibility antigen, E-k alpha chain Mus musculus 1.90 22.1
1fv1 rasmol 82 A 181 A HLA class II histocompatibility antigen, Dr alpha chain Homo sapiens 1.90 23.3
1iak rasmol 82 A 181 A H-2 class II histocompatibility antigen, A-k alpha chain Mus musculus 1.90 21.4
1hdm rasmol 88 B 185 B class II histocompatibility antigen, M beta chain Homo sapiens 2.50 19.7
1fng rasmol 94 B 188 B H-2 class II histocompatibility antigen, E-k beta chain Mus musculus 1.90 22.1
1fv1 rasmol 93 B 190 B Major histocompatibility complex beta chain Homo sapiens 1.90 23.3
1iak rasmol 93 B 190 B H-2 class II histocompatibility antigen, A-k beta chain Mus musculus 1.90 21.4
1hdm rasmol 94 A 196 A class II histocompatibility antigen, M alpha chain Homo sapiens 2.50 19.7
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : ig  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1fnga  (  83 )     anvaPeVtVlsrspvnlgepniLiÇfIdkFsppvVnVtWlrngrpvteg
1fv1a  (  82 )    itnvpPeVtVltnspVelrepnvLiÇfIdkFtppvVnVtWlrngkpvttg
1iaka  (  82 )    atneaPqAtVfpkspvllgqpntLiÇfVdnIfppvInItWlrnsksvtdg
1hdmb  (  88 )      trpPsVqVakttpfnTrepvmLAÇyVwgFypaeVtItWrkngklvmhs
1fngb  (  94 )      rvePtVtVyptktqplehhnlLVÇsVsdFypgnieVrWfrngkeektg
1fv1b  (  93 )     rrvePkVtVypartqtlqhhnlLVÇsVngFypgsieVrWfrnsqeekag
1iakb  (  93 )     rleqPsVvIslsrtealnhhNtLvÇsVtdFypakikVrWfrngqeetvg
1hdma  (  94 )     srgfPiAeVftlkpLefgkpNtLVÇfVsnLfppmLtVnWhdhsvpve-g
                        bbbbbb         bbbbbbbbbb     bbbbbb  bb    

                           60        70        80        90        100 
1fnga  ( 132 )    vsetvflprddhlfrKfhyLtFlPstddfYDÇeVdHwgleeplrkhwefe
1fv1a  ( 132 )    vsetvflpredhlfrKfhyLpflPstedvYdÇrVeHwgldepllkhwefd
1iaka  ( 132 )    vyetsffvnrdysfhklSyLtFiPsdddiYdÇkVeHwgleepvlkhwepe
1hdmb  ( 136 )    sahktAqpngdwtyqtlshLaltpsygdtYtÇVVeHiGapepilrdwtPg
1fngb  ( 142 )    ivstglvrngdwtFqTlvmLetvpqsgevYtÇqVeHpSltdpvtvew   
1fv1b  ( 142 )    vvstgliqngdwtfqTlVmLeTvprsgevYtÇqVeHpsvtspltvewra 
1iakb  ( 142 )    vsstqlirngdwtFqvlVmLeMtPrrgevYtÇhVeHpSltspitvewra 
1hdma  ( 142 )    fgptfvsavdglsfqAfSyLnftPepsdifsÇiVtHepdrytaiaywvPr
                   bb   bb     bbbbbbbbb       bbbbbb       bbbbb   

                       
1fnga  ( 182 )    e    
1fv1a                  
1iaka                  
1hdmb                  
1fngb                  
1fv1b                  
1iakb                  
1hdma  ( 192 )    nalps
                       


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