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Align your sequence(s)

Starch binding domain

class : all beta number of structures : 8 average size : 105 average PID : 52 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1pam rasmol 583 A 686 A Cyclodextrin glucanotransferase Bacillus Sp. Strain 1011 1.8 16.1
1d3c rasmol 584 A 686 A Cyclodextrin glycosyltransferase Bacillus circulans 1.78 22.0
1cgt rasmol 580 - 684 - Cyclodextrin glycosyltransferase Bacillus circulans, strain 8 2.0 16.6
1ciu rasmol 579 - 683 - Cyclodextrin glycosyltransferase Thermoanaerobacterium thermosulfurigenes EM1 2.3 N/A
1cyg rasmol 575 - 680 - Cyclodextrin glucanotransferase Bacillus stearothermophilus 2.5 15.4
1qhp rasmol 577 A 686 A Alpha amylase Bacillus stearothermophilus 1.70 15.3
1kum rasmol 509 - 616 - Glucoamylase Aspergillus niger N/A N/A
1cqy rasmol 418 A 516 A Beta amylase Bacillus cereus 1.95 18.1
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : CBM_20  
CAZy : CBM_20  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1pama  ( 583 )      tgdqvtVrFVInnA-tTalgqnVfLTGnvseLgnwdpn------nAiG
1d3ca  ( 584 )       gdqvsVrFVVnnA-tTalgqnVyLTGsvseLgnwdpa------kAiG
1cgt   ( 580 )     ltgdqVtVrFVVnnA-sttlgqnLyLTGnVaeLGnwstgs-----tAiG
1ciu   ( 579 )     ltgnqicVrFVVnnA-sTvygenVyLTGnvaeLgnwdts------kAiG
1cyg   ( 575 )     ltndqvsVrFVVnnA-ttnlgqnIyIVGnvyeLgnwdts------kAiG
1qhpa  ( 577 )     lsgtqTsVvFtVksAppTnlgDkIyLTGnipeLGnwstdtsgavnnAqG
1kum   ( 509 )    çttptAVaVtFdLt-A-tttygenIyLVGsisqLgdwets------dGi-
1cqya  ( 418 )        tpvmQtIVVknV-pttigDtVyITGnraeLGswdtk-----qyPiq
                       bbbbbbbbb         bbbbbb  333                

                           60        70        80        90        100 
1pama  ( 624 )    pMynqvvyq--yptWyydVsVPagqtIeFkFLkkqgs-tvtwEgganrtf
1d3ca  ( 624 )    pMynqvvyq--ypnWyydVsVPagktIeFkFLkkqgs-tvtwEggsnhtf
1cgt   ( 623 )    pAfnqvihq--yptWyydVsVPagkqLeFkFFkkngs-titwEsgsnhtf
1ciu   ( 621 )    pMfnqvvyq--yptWYydvsVPagttIqFkFIkkngn-titwEggsnhty
1cyg   ( 617 )    pMfnqvvys--yptWyidVsVPegktIeFkFIkkdsqgnvtwEsgsnhvy
1qhpa  ( 626 )    pLlap---n--ypdwfyvfsVPagktIqFkFFIkradgtiqwEngsnhva
1kum   ( 550 )    aLsad-kYtssdplWyvtVtLpagesFeYkfIrIesddsVewesdpnrey
1cqya  ( 458 )    Lyydshs-----nDwrgnvvLpAernIeFkAFIkskdgtvkswQtiqqsw
                                bbbbbbbb   bbbbbbbbb     bbb     bbb

                           110       120 
1pama  ( 671 )    t-Tpts---gtatvnvnwqp
1d3ca  ( 671 )    t-Apss---gtatinvnwqp
1cgt   ( 670 )    t-Tpas---gtatvtvnwq 
1ciu   ( 668 )    t-Vpss---stgtvivnWqq
1cyg   ( 665 )    t-Tptn---ttgkiivdWqn
1qhpa  ( 671 )    t-Tptg---atgnitvtWqn
1kum   ( 599 )    t-VpqaçgtstAtVtDtwr 
1cqya  ( 503 )    npVpl----kttshtssw  
                  b          bbbbbb   


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