Ligand-binding domain of nuclear hormone receptors
|
class : all alpha |
number of structures : 5 |
average size : 248 |
average PID : 22
% |
PDB
code |
start
residue |
start
chain |
end
residue |
end
chain |
name |
source |
resolution |
R-factor |
1lbd
 |
225 |
- |
462 |
- |
retinoic acid receptor alpha |
Homo sapiens |
2.7 |
23 |
2lbd
 |
182 |
- |
419 |
- |
retinoic acid receptor gamma-2 |
Homo sapiens |
2.0 |
21 |
1prg
 |
207 |
A |
476 |
A |
peroxisome proliferator activated receptor gamma |
Homo sapiens |
2.2 |
24.6 |
3ert
 |
306 |
A |
551 |
A |
estrogen receptor |
Homo sapiens |
1.90 |
22.9 |
1a28
 |
682 |
A |
932 |
A |
progesterone receptor |
Homo sapiens |
1.8 |
19.05 |
|
pir |
ali |
malform |
joy-html |
colour postscript |
postscript |
superimposed coordinates
(RasMol)
|
10 20 30 40 50
1lbd ( 225 ) sanedMpverIleAElavepk------------------------te
2lbd ( 182 ) lspqleelitkVSkAHqeTFp-slcqlg-----------kyttn----
1prga ( 207 ) esadlralAkhLydsYikSFpltkakAraiLtgkttdkspfvIydmns
3erta ( 306 ) lalsltadqMvsaLldAepp---------------------ilySeydp-
1a28a ( 682 ) qlipplInlLmsiepd---------------------viyAgHdn-
aaaaaaaaa
60 70 80 90 100
1lbd ( 248 ) tyveanmglnpsspn----------dpvtnicqAadkqlftLveWAkrIP
2lbd ( 214 ) -----------ssadhrvq---LdlgLwdkfseLatkciikIveFAkrLp
1prga ( 255 ) lmmGedkikfkhitplqeqskevAiRifqgcqfrsveavqeIteYAksIp
3erta ( 334 ) ------trpfs------------easmmglltnLadrelvhMInWAkrVp
1a28a ( 706 ) ------tkpdt------------sssLltslnqLgerqLlsvvkWSksLp
aaaaaaaaaaaaaaaaaaaaa
110 120 130 140 150
1lbd ( 288 ) hFseLpldDqviLlragwneLlIAsFShrSia-vk---dGIlLatG-lhV
2lbd ( 250 ) gFtgLsiaDqitLlkaACldIlMLRiCtR----ytpeqdtMTfsdG-LtL
1prga ( 305 ) gFvnldlnDqvtLlkyGVHEIIYTmlAsl----Mnk--dGvLiseGqGfm
3erta ( 366 ) GFvdLtlhdqVhLLecAwlEIlMIglVwrSme--hp-gkLlFA--pnLlL
1a28a ( 738 ) gFrnLhidDqitLiqYsWmsLmVFgLGwrSykhvsG-qmLyfA--pdLiL
333 aaaaaaaaaaaaaaaaaaaaaa bbb bb
160 170 180 190 200
1lbd ( 333 ) hrnsAhsa--gvgaIFdrVlteLvsKmrdMqMdkTELGCLRAIVLFnpds
2lbd ( 295 ) nrtQMhNA--GfGplTdlVFafAgqll-pLeMddtEtGLLSAICLIcGdr
1prga ( 349 ) treFLkslrkpFgdfmepKFeFAvkFn-aleLdDsDLAIFIAVIILsGdR
3erta ( 411 ) drnqGkcV-egMveiFdmLlatSsrFr-mmnLqgeEFVCLKSiILLnSGV
1a28a ( 785 ) neqrMk-e-ssFyslCltmwqIPqeFv-klqVsqeEFLCMkVLLLLNtIp
baaaa aaaaaaaaaaa aaaaaaaaaaaa
210 220 230 240 250
1lbd ( 381 ) k--------gLsnpaeVeaLrekVyaSLeayCkhkypeq---pgRfakLl
2lbd ( 342 ) m--------dLeepekVdklqepLleALrlyArrrrp---sqpyMfprMl
1prga ( 398 ) p--------gLlnvkpIediqdnLlqALelQLklnhp---essqLfakLl
3erta ( 459 ) ytFlsstlksleekdhIhrVldkItdTLihlMakagltlqqqhqrlaqLl
1a28a ( 832 ) l-------egLrsqtqFeemrssYirELikAIglrqkgvvsssqrfyqLT
aaaaaaaaaaaaaaaaaaaa aaaaaa
260 270 280 290 300
1lbd ( 420 ) lrlpaLrsIGlkClehlFff------------kLiGdtpidtflmemlea
2lbd ( 381 ) mkitdLrgiStkgaeraitLkmeIp---gpMppliremlenp
1prga ( 437 ) qkmtdLrqIvtehvqllqvIkktetd--mslhplLqeiykdl
3erta ( 509 ) lIlshIrhMSnkgmehlysmkc----knvv---plydlLlemLd------
1a28a ( 875 ) klLdnLhdlVkqLHlyclntfiqsralsVeFpemmsevIaaqLpkilagm
a aaaaaaaaaaaaaaaaaa aaaaaa
1lbd ( 458 ) ph---qmt
2lbd
1prga
3erta ( 546 ) --ahrlha
1a28a ( 925 ) Vkpllfhk